Publications of Daniel Schindler

Lindeboom, T. A.; Sanchez Olmos, M. d. C.; Schulz, K.; Brinkmann, C. K.; Ramírez Rojas, A. A.; Hochrein, L.; Schindler, D.: An optimized genotyping workflow for identifying highly SCRaMbLEd synthetic yeasts. ACS Synthetic Biology, pp. 1116 - 1127 (2024)

Sendker, F. L.; Lo, Y. K.; Heimerl, T.; Bohn, S.; Persson, L. J.; Mais, C.-N.; Sadowska, W.; Paczia, N.; Nußbaum, E.; del Carmen Sánchez Olmos, M. et al.; Forchhammer, K.; Schindler, D.; Erb, T. J.; Benesch, J. L. P.; Marklund, E. G.; Bange, G.; Schuller, J. M.; Hochberg, G. K. A.: Emergence of fractal geometries in the evolution of a metabolic enzyme. Nature (2024)

Ramírez Rojas, A. A.; Brinkmann, C. K.; Köbel, T. S.; Schindler, D.: DuBA.flow─A low-cost, long-read amplicon sequencing workflow for the validation of synthetic DNA constructs. ACS Synthetic Biology (2024)

Cheng, L.; Zhao, S.; Li, T.; Hou, S.; Luo, Z.; Xu, J.; Yu, W.; Jiang, S.; Monti, M.; Schindler, D. et al.; Zhang, W.; Hou, C.; Ma, Y.; Cai, Y.; Boeke, J. D.; Dai, J.: Large-scale genomic rearrangements boost SCRaMbLE in Saccharomyces cerevisiae. Nature Communications 15 (1), 770 (2024)

Philipp, N.; Brinkmann, C. K.; Georg, J.; Schindler, D.; Berghoff, B. A.: DIGGER-Bac: prediction of seed regions for high-fidelity construction of synthetic small RNAs in bacteria. Bioinformatics 39 (5), btad285 (2023)

Abramczyk, D.; Sanchez Olmos, M. d. C.; Ramírez Rojas, A. A.; Schindler, D.; Robertson, D.; McColm, S.; Marston, A. L.; Barlow, P. N.: A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material. Microbial Cell Factories 22 (1), 259 (2023)

Luo, S.; Diehl, C.; He, H.; Bae, Y.; Klose, M.; Claus, P.; Cortina, N. S.; Fernandez, C. A.; Schulz-Mirbach, H. A. M.; McLean, R. et al.; Ramírez Rojas, A. A.; Schindler, D.; Paczia, N.; Erb, T. J.: Construction and modular implementation of the THETA cycle for synthetic CO₂ fixation. Nature Catalysis 6 (12), pp. 1228 - 1240 (2023)

Schindler, D.; Walker, R. S.K.; Jiang, S.; Brooks, A. N.; Wang, Y.; Müller, C. A.; Cockram, C.; Luo, Y.; García, A.; Schraivogel, D. et al.; Mozziconacci, J.; Pena, N.; Assari, M.; Olmos, S.; Carmen, M. d.; Zhao, Y.; Ballerini, A.; Blount, B. A.; Cai, J.; Ogunlana, L.; Liu, W.; Jönsson, K.; Abramczyk, D.; Garcia-Ruiz, E.; Turowski, T. W.; Swidah, R.; Ellis, T.; Pan, T.; Antequera, F.; Shen, Y.; Nieduszynski, C. A.; Koszul, R.; Dai, J.; Steinmetz, L. M.; Boeke, J. D.; Cai, Y.: Design, construction, and functional characterization of a tRNA neochromosome in yeast. Cell 186 (24), pp. 5237 - 5253.e22 (2023)

Shen, Y.; Gao, F.; Wang, Y.; Wang, Y.; Zheng, J.; Gong, J.; Zhang, J.; Luo, Z.; Schindler, D.; Deng, Y. et al.; Ding, W.; Lin, T.; Swidah, R.; Zhao, H.; Jiang, S.; Zeng, C.; Chen, S.; Chen, T.; Wang, Y.; Luo, Y.; Mitchell, L.; Bader, J. S.; Zhang, G.; Shen, X.; Wang, J.; Fu, X.; Dai, J.; Boeke, J. D.; Yang, H.; Xu, X.; Cai, Y.: Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast. Cell genomics 3 (11), 100364 (2023)

Steube, N.; Moldenhauer, M.; Weiland, P.; Saman, D.; Kilb, A.; Ramírez Rojas, A. A.; Garg, S.; Schindler, D.; Graumann, P. L.; Benesch, J. L. P. et al.; Bange, G.; Friedrich, T.; Hochberg, G. K. A.: Fortuitously compatible protein surfaces primed allosteric control in cyanobacterial photoprotection. Nature Ecology & Evolution 7, pp. 756 - 767 (2023)

Ramírez Rojas, A. A.; Swidah, R.; Schindler, D.: Microbes of traditional fermentation processes as synthetic biology chassis to tackle future food challenges. Frontiers in Bioengineering and Biotechnology 10, 982975 (2022)

Koebel, T. S.; Palhares, R. M.; Fromm, C.; Szymanski, W. G.; Angelidou, G.; Glatter, T.; Georg, J.; Berghoff, B. A.; Schindler, D.: An easy-to-use plasmid toolset for efficient generation and benchmarking of synthetic small RNAs in bacteria. ACS Synthetic Biology 11 (9), pp. 2989 - 3003 (2022)

Ong, J. Y.; Swidah, R.; Monti, M.; Schindler, D.; Dai, J.; Cai, Y.: SCRaMbLE: A study of its robustness and challenges through enhancement of Hygromycin B resistance in a semi-synthetic yeast. Bioengineering 8 (3), 42 (2021)

Luo, Z.; Yu, K.; Xie, S.; Monti, M.; Schindler, D.; Fang, Y.; Zhao, S.; Liang, Z.; Jiang, S.; Luan, M. et al.; Xiao, C.; Cai, Y.; Dai, J.: Compacting a synthetic yeast chromosome arm. Genome Biology: Biology for the Post-Genomic Era 22 (1), 5 (2021)

Schindler, D.: Genetic Engineering and Synthetic Genomics in Yeast to Understand Life and Boost Biotechnology. Bioengineering-Basel 7 (4), pp. 137 - Article No.: 137 (2020)

Zhao, Y.; Yao, Z.; Ploessl, D.; Ghosh, S.; Monti, M.; Schindler, D.; Gao, M.; Cai, Y.; Qiao, M.; Yang, C. et al.; Cao, M.; Shao, Z.: Leveraging the Hermes Transposon to Accelerate the Development of Nonconventional Yeast-based Microbial Cell Factories. ACS SYNTHETIC BIOLOGY 9 (7), pp. 1736 - 1752 (2020)

Bruhn, M.; Schindler, D.; Kemter, F. S.; Wiley, M. R.; Chase, K.; Koroleva, G. I.; Palacios, G.; Sozhamannan, S.; Waldminghaus, T.: Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome. FRONTIERS IN MICROBIOLOGY 9, 2932 (2018)

Schindler, D.; Dai, J.; Cai, Y.: Synthetic genomics: a new venture to dissect genome fundamentals and engineer new functions. CURRENT OPINION IN CHEMICAL BIOLOGY 46, pp. 56 - 62 (2018)

Schallopp, N.; Milbredt, S.; Sperlea, T.; Kemter, F. S.; Bruhn, M.; Schindler, D.; Waldminghaus, T.: Establishing a System for Testing Replication Inhibition of the Vibrio cholerae Secondary Chromosome in Escherichia coli. ANTIBIOTICS-BASEL 7 (1), 3 (2018)

Messerschmidt, S. J.; Schindler, D.; Zumkeller, C. M.; Kemter, F. S.; Schallopp, N.; Waldminghaus, T.: Optimization and characterization of the synthetic secondary chromosome synVicII in Escherichia coli. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 4, 96 (2016)