Publications of Daniel Schindler

Messerschmidt, S. J.; Schindler, D.; Zumkeller, C. M.; Kemter, F. S.; Schallopp, N.; Waldminghaus, T.: Optimization and characterization of the synthetic secondary chromosome synVicII in Escherichia coli. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 4, 96 (2016)

Schindler, D.; Milbredt, S.; Sperlea, T.; Waldminghaus, T.: Design and Assembly of DNA Sequence Libraries for Chromosomal Insertion in Bacteria Based on a Set of Modified MoClo Vectors. ACS SYNTHETIC BIOLOGY 5 (12), pp. 1362 - 1368 (2016)

Schindler, D.; Waldminghaus, T.: Synthetic chromosomes. FEMS MICROBIOLOGY REVIEWS 39 (6), pp. 871 - 891 (2015)

Messerschmidt, S. J.; Kemter, F. S.; Schindler, D.; Waldminghaus, T.: Synthetic secondary chromosomes in Escherichia coli based on the replication origin of chromosome II in Vibrio cholerae. SI 10 (2), pp. 302 - 314 (2015)

Schindler, D.; Nowrousian, M.: The polyketide synthase gene pks4 is essential for sexual development and regulates fruiting body morphology in Sordaria macrospora. FUNGAL GENETICS AND BIOLOGY 68, pp. 48 - 59 (2014)

Schindler, D.; Waldminghaus, T.: "Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response. BMC GENOMICS 14, 638 (2013)

Gesing, S.; Schindler, D.; Nowrousian, M.: Suppression subtractive hybridization and comparative expression analysis to identify developmentally regulated genes in filamentous fungi. JOURNAL OF BASIC MICROBIOLOGY 53 (9), pp. 742 - 751 (2013)

Gesing, S.; Schindler, D.; Fraenzel, B.; Wolters, D.; Nowrousian, M.: The histone chaperone ASF1 is essential for sexual development in the filamentous fungus Sordaria macrospora. MOLECULAR MICROBIOLOGY 84 (4), pp. 748 - 765 (2012)

Brück, M.; Berghoff, B. A.; Schindler, D.: In Silico Design, In Vitro Construction, and In Vivo Application of Synthetic Small Regulatory RNAs in Bacteria. In: Synthetic Biology. Methods in Molecular Biology, Vol. 2760 (Ed. Braman, J. C.). Humana, New York, NY. (2024)

Zumkeller, C.; Schindler, D.; Waldminghaus, T.: Modular Assembly of Synthetic Secondary Chromosomes. In: BACTERIAL CHROMATIN: Methods and Protocols, pp. 71 - 94. (2018)

Brueck, M.; Koebel, T. S.; Dittmar, S.; Ramírez Rojas, A. A.; Georg, J.; Berghoff, B. A.; Schindler, D.: A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs. (2024)

Wolfram-Schauerte, M.; Moskalchuk, A.; Pozhydaieva, N.; Ramírez Rojas, A. A.; Schindler, D.; Kaiser, S.; Paczia, N.; Höfer, K.: T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection through a phage-encoded decapping enzyme. (2024)

de Vries, S. T.; Kley, L.; Schindler, D.: Use of a Golden Gate plasmid set enabling scarless MoClo-compatible transcription unit assembly. (2024)

Pozhydaieva, N.; Billau, F. A.; Wolfram-Schauerte, M.; Ramírez Rojas, A. A.; Paczia, N.; Schindler, D.; Höfer, K.: Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. (2024)

Rojas, A. A. R.; Brinkmann, C. K.; Schindler, D.: Validation of Golden Gate assemblies using highly multiplexed Nanopore amplicon sequencing. (2024)

Su, L.; Huber, E. M.; Westphalen, M.; Gellner, J.; Bode, E.; Köbel, T.; Grün, P.; Alanjary, M. M.; Glatter, T.; Schindler, D. et al.; Groll, M.; Bode, H. B.: Identification, structure and function of the methyltransferase involved in the biosynthesis of the dithiolopyrrolone antibiotic xenorhabdin. (2024)

Köbel, T. S.; Schindler, D.: Automation and miniaturization of Golden Gate DNA assembly reactions using acoustic dispensers. (2023)

Brueck, M.; Berghoff, B. A.; Schindler, D.: In silico design, in vitro construction and in vivo application of synthetic small regulatory RNAs in bacteria. (2023)

Abramczyk, D.; Sanchez Olmos, M. d. C.; Ramírez Rojas, A. A.; Schindler, D.; Robertson, D.; McColm, S.; Marston, A.; Barlow, P.: A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material. (2023)

Ramming, L.; Stukenberg, D.; Sanchez Olmos, M. d. C.; Becker, A.; Schindler, D.: DNA replication is not a limiting factor for the rapid growth of Vibrio natriegens. (2023)