Publications of Daniel Schindler

Ramming, Lea, Stukenberg, Daniel, Sanchez Olmos, Maria del Carmen, Glatter, Timo, Becker, Anke and Schindler, Daniel: (2024) Rationally designed chromosome fusion does not prevent rapid growth of Vibrio natriegens, Communications Biology, London, Springer Nature, 7 (1).

Lindeboom, Timon Alexander, Sanchez Olmos, Maria del Carmen, Schulz, Karina, Brinkmann, Cedric K., Ramírez Rojas, Adán Andrés, Hochrein, Lena and Schindler, Daniel: (2024) An optimized genotyping workflow for identifying highly SCRaMbLEd synthetic yeasts, ACS Synthetic Biology, Washington, D.C., American Chemical Society, 13 (4), pp. 1116–1127.

Sendker, Franziska Luisa, Lo, Yat Kei, Heimerl, Thomas, Bohn, Stefan, Persson, Louise J., Mais, Christopher-Nils, Sadowska, Wiktoria, Paczia, Nicole, Nußbaum, Eva, del Carmen Sánchez Olmos, María, Forchhammer, Karl, Schindler, Daniel, Erb, Tobias J., Benesch, Justin L. P., Marklund, Erik G., Bange, Gert, Schuller, Jan M. and Hochberg, Georg K. A.: (2024) Emergence of fractal geometries in the evolution of a metabolic enzyme, Nature, London, Nature Publishing Group, 628 (8009), pp. 894–900.

Ramírez Rojas, Adán Andrés, Brinkmann, Cedric K., Köbel, Tania S. and Schindler, Daniel: (2024) DuBA.flow─A low-cost, long-read amplicon sequencing workflow for the validation of synthetic DNA constructs, ACS Synthetic Biology, Washington, D.C., American Chemical Society, January.

Cheng, Li, Zhao, Shijun, Li, Tianyi, Hou, Sha, Luo, Zhouqing, Xu, Jinsheng, Yu, Wenfei, Jiang, Shuangying, Monti, Marco, Schindler, Daniel, Zhang, Weimin, Hou, Chunhui, Ma, Yingxin, Cai, Yizhi, Boeke, Jef D. and Dai, Junbiao: (2024) Large-scale genomic rearrangements boost SCRaMbLE in Saccharomyces cerevisiae, Nature Communications, London, Nature Publishing Group, 15 (1).

Schindler, Daniel, Walker, Roy S.K. and Cai, Yizhi: (2024) Methodological advances enabled by the construction of a synthetic yeast genome, Cell Reports Methods, Amsterdam, The Netherlands, Elsevier, 4 (4).

Philipp, N., Brinkmann, C. K., Georg, J., Schindler, D. and Berghoff, B. A.: (2023) DIGGER-Bac: prediction of seed regions for high-fidelity construction of synthetic small RNAs in bacteria, Bioinformatics, Oxford, Oxford University Press, 39 (5).

Abramczyk, Dariusz, Sanchez Olmos, Maria del Carmen, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Robertson, Daniel, McColm, Stephen, Marston, Adele L. and Barlow, Paul N.: (2023) A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material, Microbial Cell Factories, BioMed Central, 22 (1).

Luo, Shanshan, Diehl, Christoph, He, Hai, Bae, YoungJun, Klose, Melanie, Claus, Peter, Cortina, Nina Socorro, Fernandez, Celia Alvarez, Schulz-Mirbach, Helena Anna Maria, McLean, Richard, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Paczia, Nicole and Erb, Tobias J.: (2023) Construction and modular implementation of the THETA cycle for synthetic CO₂ fixation, Nature Catalysis, New York, Nature Publishing Group, 6 (12), pp. 1228–1240.

Schindler, Daniel, Walker, Roy S.K., Jiang, Shuangying, Brooks, Aaron N., Wang, Yun, Müller, Carolin A., Cockram, Charlotte, Luo, Yisha, García, Alicia, Schraivogel, Daniel, Mozziconacci, Julien, Pena, Noah, Assari, Mahdi, Olmos, Sánchez, Carmen, María del, Zhao, Yu, Ballerini, Alba, Blount, Benjamin A., Cai, Jitong, Ogunlana, Lois, Liu, Wei, Jönsson, Katarina, Abramczyk, Dariusz, Garcia-Ruiz, Eva, Turowski, Tomasz W., Swidah, Reem, Ellis, Tom, Pan, Tao, Antequera, Francisco, Shen, Yue, Nieduszynski, Conrad A., Koszul, Romain, Dai, Junbiao, Steinmetz, Lars M., Boeke, Jef D. and Cai, Yizhi: (2023) Design, construction, and functional characterization of a tRNA neochromosome in yeast, Cell, Cambridge, Mass., Cell Press, 186 (24), pp. 5237–5253.e22.

Shen, Yue, Gao, Feng, Wang, Yun, Wang, Yuerong, Zheng, Ju, Gong, Jianhui, Zhang, Jintao, Luo, Zhouqing, Schindler, Daniel, Deng, Yang, Ding, Weichao, Lin, Tao, Swidah, Reem, Zhao, Hongcui, Jiang, Shuangying, Zeng, Cheng, Chen, Shihong, Chen, Tai, Wang, Yong, Luo, Yisha, Mitchell, Leslie, Bader, Joel S., Zhang, Guojie, Shen, Xia, Wang, Jian, Fu, Xian, Dai, Junbiao, Boeke, Jef D., Yang, Huanming, Xu, Xun and Cai, Yizhi: (2023) Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast, Cell genomics, Amsterdam, Elsevier, 3 (11).

Steube, Niklas, Moldenhauer, Marcus, Weiland, Paul, Saman, Dominik, Kilb, Alexandra, Ramírez Rojas, Adán Andrés, Garg, Sriram, Schindler, Daniel, Graumann, Peter L., Benesch, Justin L. P., Bange, Gert, Friedrich, Thomas and Hochberg, Georg K. A.: (2023) Fortuitously compatible protein surfaces primed allosteric control in cyanobacterial photoprotection, Nature Ecology & Evolution, London, Nature Publishing Group, 7, pp. 756–767.

Ramírez Rojas, A. A., Swidah, R. and Schindler, D.: (2022) Microbes of traditional fermentation processes as synthetic biology chassis to tackle future food challenges, Frontiers in Bioengineering and Biotechnology, Lausanne, Frontiers Media, 10, October.

Koebel, Tania S., Palhares, Rafael Melo, Fromm, Christin, Szymanski, Witold G., Angelidou, Georgia, Glatter, Timo, Georg, Jens, Berghoff, Bork A. and Schindler, Daniel: (2022) An easy-to-use plasmid toolset for efficient generation and benchmarking of synthetic small RNAs in bacteria, ACS Synthetic Biology, Washington, D.C., American Chemical Society, 11 (9), pp. 2989–3003.

Ong, Jun Yang, Swidah, Reem, Monti, Marco, Schindler, Daniel, Dai, Junbiao and Cai, Yizhi: (2021) SCRaMbLE: A study of its robustness and challenges through enhancement of Hygromycin B resistance in a semi-synthetic yeast, Bioengineering, Basel, Switzerland, MDPI, 8 (3).

Luo, Zhouqing, Yu, Kang, Xie, Shangqian, Monti, Marco, Schindler, Daniel, Fang, Yuan, Zhao, Shijun, Liang, Zhenzhen, Jiang, Shuangying, Luan, Meiwei, Xiao, Chuanle, Cai, Yizhi and Dai, Junbiao: (2021) Compacting a synthetic yeast chromosome arm, Genome Biology: Biology for the Post-Genomic Era, London, BioMed Central Ltd., 22 (1).

Schindler, Daniel: (2020) Genetic Engineering and Synthetic Genomics in Yeast to Understand Life and Boost Biotechnology, Bioengineering-Basel, 7 (4), pp. 137-Article No.: 137.

Zhao, Yuxin, Yao, Zhanyi, Ploessl, Deon, Ghosh, Saptarshi, Monti, Marco, Schindler, Daniel, Gao, Meirong, Cai, Yizhi, Qiao, Mingqiang, Yang, Chao, Cao, Mingfeng and Shao, Zengyi: (2020) Leveraging the Hermes Transposon to Accelerate the Development of Nonconventional Yeast-based Microbial Cell Factories, ACS SYNTHETIC BIOLOGY, 9 (7), pp. 1736–1752.

Bruhn, Matthias, Schindler, Daniel, Kemter, Franziska S., Wiley, Michael R., Chase, Kitty, Koroleva, Galina I., Palacios, Gustavo, Sozhamannan, Shanmuga and Waldminghaus, Torsten: (2018) Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome, FRONTIERS IN MICROBIOLOGY, 9, November.

Schindler, Daniel, Dai, Junbiao and Cai, Yizhi: (2018) Synthetic genomics: a new venture to dissect genome fundamentals and engineer new functions, CURRENT OPINION IN CHEMICAL BIOLOGY, 46, October, pp. 56–62.