Publications of Daniel Schindler

Schallopp, Nadine, Milbredt, Sarah, Sperlea, Theodor, Kemter, Franziska S., Bruhn, Matthias, Schindler, Daniel and Waldminghaus, Torsten: (2018) Establishing a System for Testing Replication Inhibition of the Vibrio cholerae Secondary Chromosome in Escherichia coli, ANTIBIOTICS-BASEL, 7 (1).

Messerschmidt, Sonja J., Schindler, Daniel, Zumkeller, Celine M., Kemter, Franziska S., Schallopp, Nadine and Waldminghaus, Torsten: (2016) Optimization and characterization of the synthetic secondary chromosome synVicII in Escherichia coli, FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 4, December.

Schindler, Daniel, Milbredt, Sarah, Sperlea, Theodor and Waldminghaus, Torsten: (2016) Design and Assembly of DNA Sequence Libraries for Chromosomal Insertion in Bacteria Based on a Set of Modified MoClo Vectors, ACS SYNTHETIC BIOLOGY, 5 (12), pp. 1362–1368.

Schindler, Daniel and Waldminghaus, Torsten: (2015) Synthetic chromosomes, FEMS MICROBIOLOGY REVIEWS, 39 (6), pp. 871–891.

Messerschmidt, Sonja J., Kemter, Franziska S., Schindler, Daniel and Waldminghaus, Torsten: (2015) Synthetic secondary chromosomes in Escherichia coli based on the replication origin of chromosome II in Vibrio cholerae, SI, 10 (2), pp. 302–314.

Schindler, Daniel and Nowrousian, Minou: (2014) The polyketide synthase gene pks4 is essential for sexual development and regulates fruiting body morphology in Sordaria macrospora, FUNGAL GENETICS AND BIOLOGY, 68, July, pp. 48–59.

Schindler, Daniel and Waldminghaus, Torsten: (2013) "Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response, BMC GENOMICS, 14, September.

Gesing, Stefan, Schindler, Daniel and Nowrousian, Minou: (2013) Suppression subtractive hybridization and comparative expression analysis to identify developmentally regulated genes in filamentous fungi, JOURNAL OF BASIC MICROBIOLOGY, 53 (9), pp. 742–751.

Gesing, Stefan, Schindler, Daniel, Fraenzel, Benjamin, Wolters, Dirk and Nowrousian, Minou: (2012) The histone chaperone ASF1 is essential for sexual development in the filamentous fungus Sordaria macrospora, MOLECULAR MICROBIOLOGY, 84 (4), pp. 748–765.

Brück, Michel, Berghoff, Bork A. and Schindler, Daniel: (2024) In Silico Design, In Vitro Construction, and In Vivo Application of Synthetic Small Regulatory RNAs in Bacteria, in Braman, J. C. Ed., Synthetic Biology. Methods in Molecular Biology, Humana, New York, NY.

Zumkeller, Celine, Schindler, Daniel and Waldminghaus, Torsten: (2018) Modular Assembly of Synthetic Secondary Chromosomes, in BACTERIAL CHROMATIN: Methods and Protocols, (Methods in Molecular Biology, 1837), pp. 71–94.

Brueck, Michel, Koebel, Tania S., Dittmar, Sophie, Ramírez Rojas, Adán Andrés, Georg, Jens, Berghoff, Bork A. and Schindler, Daniel: (2024) A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs, bioRxiv: the preprint server for biology.

Wolfram-Schauerte, Maik, Moskalchuk, Anastassiya, Pozhydaieva, Nadiia, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Kaiser, Stefanie, Paczia, Nicole and Höfer, Katharina: (2024) T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection through a phage-encoded decapping enzyme, bioRxiv: the preprint server for biology.

de Vries, Stijn Tobias, Kley, Laura and Schindler, Daniel: (2024) Use of a Golden Gate plasmid set enabling scarless MoClo-compatible transcription unit assembly, arXiv.

Pozhydaieva, Nadiia, Billau, Franziska Anna, Wolfram-Schauerte, Maik, Ramírez Rojas, Adán Andrés, Paczia, Nicole, Schindler, Daniel and Höfer, Katharina: (2024) Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications, bioRxiv: the preprint server for biology.

Rojas, Adan A Ramirez, Brinkmann, Cedric K and Schindler, Daniel: (2024) Validation of Golden Gate assemblies using highly multiplexed Nanopore amplicon sequencing, arXiv.

Su, Li, Huber, Eva M., Westphalen, Margaretha, Gellner, Jonas, Bode, Edna, Köbel, Tania, Grün, Peter, Alanjary, Mohammad M., Glatter, Timo, Schindler, Daniel, Groll, Michael and Bode, Helge B.: (2024) Identification, structure and function of the methyltransferase involved in the biosynthesis of the dithiolopyrrolone antibiotic xenorhabdin, bioRxiv: the preprint server for biology.

Köbel, Tania S. and Schindler, Daniel: (2023) Automation and miniaturization of Golden Gate DNA assembly reactions using acoustic dispensers, arXiv.

Brueck, Michael, Berghoff, Bork A. and Schindler, Daniel: (2023) In silico design, in vitro construction and in vivo application of synthetic small regulatory RNAs in bacteria, arXiv.

Abramczyk, Dariusz, Sanchez Olmos, Maria del Carmen, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Robertson, Daniel, McColm, Stephen, Marston, Adele and Barlow, Paul: (2023) A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material, bioRxiv: the preprint server for biology.