Publications of E. Stukenbrock

Amandine, C., Ebert, D., Stukenbrock, E., Rodríguez de la Vega, R. C., Tiffin, P., Croll, D. and Tellier, A.: (2022) Unraveling coevolutionary dynamics using ecological genomics, Trends in Genetics, Elsevier Current Trends, 38 (10), pp. 1003–1012.

Schotanus, Klaas, Soyer, Jessica, Connolly, L., Grandaubert, Jonathan, Happel, Petra, Smith, K., Freitag, M. and Stukenbrock, Eva: (2015) Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes, Epigenetics & Chromatin, 8, October.

Poppe, Stephan, Dorsheimer, Lena, Happel, Petra and Stukenbrock, Eva: (2015) Rapidly Evolving Genes Are Key Players in Host Specialization and Virulence of the Fungal Wheat Pathogen Zymoseptoria tritici (Mycosphaerella graminicola), PLOS Pathogens, San Francisco, CA, Public Library of Science, 11 (7).

Brunner, P., Torriani, S., Croll, D., Stukenbrock, Eva and McDonald, B.: (2014) Hitchhiking Selection Is Driving Intron Gain in a Pathogenic Fungus, Molecular Biology and Evolution, OXFORD, OXFORD UNIV PRESS, 31 (7), pp. 1741–1749.

Kellner, Ronny, Bhattacharyya, Amitava, Poppe, Stephan, Hsu, T., Brem, R. and Stukenbrock, Eva: (2014) Expression Profiling of the Wheat Pathogen Zymoseptoria tritici Reveals Genomic Patterns of Transcription and Host-Specific Regulatory Programs, Genome Biology and Evolution, OXFORD, OXFORD UNIV PRESS, 6 (6), pp. 1353–1365.

Stukenbrock, Eva and Croll, D.: (2014) The evolving fungal genome, Fungal Biology Reviews, OXFORD, ELSEVIER SCI LTD, 28 (1), pp. 1–12.

Dutheil, Julien, Gaillard, S. and Stukenbrock, Eva: (2014) MafFilter: a highly flexible and extensible multiple genome alignment files processor, BMC Genomics, LONDON, BIOMED CENTRAL LTD, 15, January.

Stukenbrock, Eva: (2014) Speciation Genomics of Fungal Plant Pathogens, FUNGI, pp. 397–423.

Stukenbrock, E. H.: (2013) Evolution, selection and isolation: a genomic view of speciation in fungal plant pathogens, New Phytologist, HOBOKEN, WILEY-BLACKWELL, 199 (4), pp. 895–907.

Brunner, P. C., Torriani, S. F. F., Croll, D., Stukenbrock, E. H. and McDonald, B. A.: (2013) Coevolution and Life Cycle Specialization of Plant Cell Wall Degrading Enzymes in a Hemibiotrophic Pathogen, Molecular Biology and Evolution, OXFORD, OXFORD UNIV PRESS, 30 (6), pp. 1337–1347.

Hjortshoj, R. L., Ravnshoj, A. R., Nyman, M., Orabi, J., Backes, G., Pinnschmidt, H., Havis, N., Stougaard, J. and Stukenbrock, E. H.: (2013) High levels of genetic and genotypic diversity in field populations of the barley pathogen Ramularia collo-cygni, European Journal of Plant Pathology, DORDRECHT, SPRINGER, 136 (1), pp. 51–60.

Stukenbrock, E. H., Quaedvlieg, W., Javan-Nikhah, M., Zala, M., Crous, P. W. and McDonald, B. A.: (2012) Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola), Mycologia, LAWRENCE, ALLEN PRESS INC, 104 (6), pp. 1397–1407.

Stukenbrock, E. H. and Bataillon, T.: (2012) A Population Genomics Perspective on the Emergence and Adaptation of New Plant Pathogens in Agro-Ecosystems, PLoS Pathogens, SAN FRANCISCO, PUBLIC LIBRARY SCIENCE, 8 (9).

Stukenbrock, E. H., Christiansen, F. B., Hansen, T. T., Dutheil, J. Y. and Schierup, M. H.: (2012) Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species, Proceedings of the National Academy of Sciences of the United States of America, WASHINGTON, NATL ACAD SCIENCES, 109 (27), pp. 10954–10959.

Tan, Kar-Chun, Ferguson-Hunt, Margo, Rybak, Kasia, Waters, Ormonde D. C., Stanley, Will A., Bond, Charles S, Stukenbrock, Eva H., Friesen, Timothy L., Faris, Justin D., McDonald, Bruce A. and Oliver, Richard P: (2012) Quantitative Variation in Effector Activity of ToxA Isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis, Molecular Plant-Microbe Interactions, 25 (4), pp. 515–522.

Torriani, S. F. F., Stukenbrock, E. H., Brunner, P. C., McDonald, B. A. and Croll, D.: (2011) Evidence for Extensive Recent Intron Transposition in Closely Related Fungi, Current Biology, CAMBRIDGE, CELL PRESS, 21 (23), pp. 2017–2022.

Schirawski, J., Mannhaupt, G., Münch, K., Brefort, T., Schipper, K., Doehlemann, G., Di Stasio, M., Rossel, N., Mendoza-Mendoza, A., Pester, D., Muller, O., Winterberg, B., Meyer, E., Ghareeb, H., Wollenberg, T., Munsterkotter, M., Wong, P., Walter, M., Stukenbrock, E., Guldener, U. and Kahmann, R.: (2010) Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison, Science, 330 (6010), pp. 1546–1548.

Stukenbrock, E.H. and Dutheil, J.Y.: (2012) Comparing fungal genomes: Insight into functional and evolutionary processes, in Plant Fungal Pathogens: Methods and Protocols, New York, Springer (Methods in Molecular Biology, 835), pp. 531–548.