Publications of Julien Dutheil

Schweizer, Gabriel, Haider, Muhammad Bilal, Barroso, Gustavo V, Rössel, Nicole, Münch, Karin, Kahmann, Regine and Dutheil, Julien: (2021) Population genomics of the maize pathogen Ustilago maydis: Demographic history and role of virulence clusters in adaptation., Genome Biology and Evolution, Oxford, Oxford Univ. Press, 13 (5).

Schweizer, G., Muench, K., Mannhaupt, G., Schirawski, J., Kahmann, R. and Dutheil, J. Y.: (2018) Positively Selected Effector Genes and Their Contribution to Virulence in the Smut Fungus Sporisorium reilianum, GENOME BIOLOGY AND EVOLUTION, 10 (2), pp. 629–645.

Tollot, M., Assmann, D., Becker, C., Altmuller, J., Dutheil, J.Y., Wegner, C.-E. and Kahmann, R.: (2016) The WOPR Protein Ros1 Is a Master Regulator of Sporogenesis and Late Effector Gene Expression in the Maize Pathogen Ustilago maydis, PLoS Pathogens, 12 (6).

Dutheil, J.Y., Mannhaupt, G., Schweizer, G., Sieber, C.M.K., Münsterkotter, M., Güldener, U., Schirawski, J. and Kahmann, R.: (2016) A Tale of Genome Compartmentalization: The Evolution of Virulence Clusters in Smut Fungi, Genome Biology and Evolution, 8 (3), pp. 681–704.

Figuet, E., Romiguier, J., Dutheil, Julien and Galtier, N.: (2014) Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals, Journal of Evolutionary Biology, HOBOKEN, WILEY-BLACKWELL, 27 (5), pp. 899–910.

Dutheil, Julien, Gaillard, S. and Stukenbrock, Eva: (2014) MafFilter: a highly flexible and extensible multiple genome alignment files processor, BMC Genomics, LONDON, BIOMED CENTRAL LTD, 15, January.

Gueguen, L., Gaillard, S., Boussau, B., Gouy, M., Groussin, M., Rochette, N. C., Bigot, T., Fournier, D., Pouyet, F., Cahais, V., Bernard, A., Scornavacca, C., Nabholz, B., Haudry, A., Dachary, L., Galtier, N., Belkhir, K. and Dutheil, J. Y.: (2013) Bio plus plus: Efficient Extensible Libraries and Tools for Computational Molecular Evolution, Molecular Biology and Evolution, OXFORD, OXFORD UNIV PRESS, 30 (8), pp. 1745–1750.

Stukenbrock, E. H., Christiansen, F. B., Hansen, T. T., Dutheil, J. Y. and Schierup, M. H.: (2012) Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species, Proceedings of the National Academy of Sciences of the United States of America, WASHINGTON, NATL ACAD SCIENCES, 109 (27), pp. 10954–10959.

Stukenbrock, E.H. and Dutheil, J.Y.: (2012) Comparing fungal genomes: Insight into functional and evolutionary processes, in Plant Fungal Pathogens: Methods and Protocols, New York, Springer (Methods in Molecular Biology, 835), pp. 531–548.