Publications of Yan-Ni Shi

Bozhüyük, Kenan A. J., Präve, Leonard, Kegler, Carsten, Schenk, Leonie, Kaiser, Sebastian, Schelhas, Christian Stefan, Shi, Yan-Ni, Kuttenlochner, Wolfgang, Schreiber, Max, Kandler, Joshua, Alanjary, Mohammad, Mohiuddin, T. M., Groll, Michael, Hochberg, Georg K. A. and Bode, Helge B.: (2024) Evolution-inspired engineering of nonribosomal peptide synthetases, Science, Washington, D.C., American Association for the Advancement of Science, 383 (6689).

Shi, Y.-M., Crames, J. J., Czech, L., Bozhüyük, K. A. J., Shi, Y.-N., Hirschmann, M., Lamberth, S., Claus, P., Paczia, N., Ruckert, C., Kalinowski, J., Bange, G. and Bode, H. B.: (2022) Genome mining enabled by biosynthetic characterization uncovers a class of benzoxazolinate-containing natural products in diverse bacteria, Angewandte Chemie, International Edition in English, Weinheim, Wiley-VCH, 61 (51).

Shi, Y.-M., Hirschmann, M., Shi, Y.-N. and Bode, H. B.: (2022) Cleavage off-loading and post-assembly-line conversions yield products with unusual termini during biosynthesis, ACS Chemical Biology, Washington, D.C., American Chemical Society, 17 (8), pp. 2221–2228.

Shi, Y.-M., Hirschmann, M., Shi, Y.-N., Ahmed, S., Abebew, D., Tobias, N. J., Grun, P., Crames, J. J., Pöschel, L., Kuttenlochner, W., Richter, C., Herrmann, J., Muller, R., Thanwisai, A., Pidot, S. J., Stinear, T. P., Groll, M., Kim, Y. and Bode, H. B.: (2022) Global analysis of biosynthetic gene clusters reveals conserved and unique natural products in entomopathogenic nematode-symbiotic bacteria, Nature Chemistry, London, UK, Nature Publishing Group, 14, April, pp. 701–712.

Sarawi, Sepas, Shi, Yan-Ni, Lotz-Winter, Hermine, Reschke, Kai, Bode, Helge B. and Piepenbring, Meike: (2022) Occurrence and chemotaxonomical analysis of amatoxins in Lepiota spp. (Agaricales), Phytochemistry, Amsterdam, Elsevier, 195, March.

Behsaz, Bahar, Bode, Edna, Gurevich, Alexey, Shi, Yan-Ni, Grundmann, Florian, Acharya, Deepa, Caraballo-Rodriguez, Andres Mauricio, Bouslimani, Amina, Panitchpakdi, Morgan, Linck, Annabell, Guan, Changhui, Oh, Julia, Dorrestein, Pieter C., Bode, Helge B., Pevzner, Pavel A. and Mohimani, Hosein: (2021) Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery (vol 12, 3225, 2021), Nature Communications, London, Nature Publishing Group, 12 (1).

Behsaz, Bahar, Bode, Edna, Gurevich, Alexey, Shi, Yan-Ni, Grundmann, Florian, Acharya, Deepa, Caraballo-Rodriguez, Andres Mauricio, Bouslimani, Amina, Panitchpakdi, Morgan, Linck, Annabell, Guan, Changhui, Oh, Julia, Dorrestein, Pieter C., Bode, Helge B., Pevzner, Pavel A. and Mohimani, Hosein: (2021) Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery, Nature Communications, London, Nature Publishing Group, 12 (1).

Tietze, Andreas, Shi, Yan-Ni, Kronenwerth, Max and Bode, Helge B.: (2020) Nonribosomal Peptides Produced by Minimal and Engineered Synthetases with Terminal Reductase Domains, CHEMBIOCHEM, 21 (19), pp. 2750–2754.

Bode, Edna, Heinrich, Antje K., Hirschmann, Merle, Abebew, Desalegne, Shi, Yan-Ni, Tien Vo, Duy, Wesche, Frank, Shi, Yi-Ming, Gruen, Peter, Simonyi, Svenja, Keller, Nadine, Engel, Yvonne, Wenski, Sebastian, Bennet, Reuel, Beyer, Sophie, Bischoff, Iris, Buaya, Anthony, Brandt, Sophie, Cakmak, Ibrahim, Cimen, Harun, Eckstein, Simone, Frank, Denia, Fuerst, Robert, Gand, Martin, Geisslinger, Gerd, Hazir, Selcuk, Henke, Marina, Heermann, Ralf, Lecaudey, Virginie, Schaefer, Wilhelm, Schiffmann, Susanne, Schueffler, Anja, Schwenk, Rebecca, Skaljac, Marisa, Thines, Eckhard, Thines, Marco, Ulshoefer, Thomas, Vilcinskas, Andreas, Wichelhaus, Thomas A. and Bode, Helge B.: (2019) Promoter Activation in Delta hfq Mutants as an Efficient Tool for Specialized Metabolite Production Enabling Direct Bioactivity Testing, ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 58 (52), pp. 18957–18963.

Bozhueyuek, Kenan A. J., Linck, Annabell, Tietze, Andreas, Kranz, Janik, Wesche, Frank, Nowak, Sarah, Fleischhacker, Florian, Shi, Yan-Ni, Gruen, Peter and Bode, Helge B.: (2019) Modification and de novo design of non-ribosomal peptide synthetases using specific assembly points within condensation domains, NATURE CHEMISTRY, 11 (7), pp. 653–661.

Shi, Yan-Ni, Pusch, Stefan, Shi, Yi-Ming, Richter, Christian, Macia-Vicente, Jose G., Schwalbe, Harald, Kaiser, Marcel, Opatz, Till and Bode, Helge B.: (2019) (+/-)-Alternarlactones A and B, Two Antiparasitic Alternariol-like Dimers from the Fungus Alternaria alternata P1210 Isolated from the Halophyte Salicornia sp., JOURNAL OF ORGANIC CHEMISTRY, 84 (17), pp. 11203–11209.

Tobias, Nicholas J., Parra-Rojas, Cesar, Shi, Yan-Ni, Shi, Yi-Ming, Simonyi, Svenja, Thanwisai, Aunchalee, Vitta, Apichat, Chantratita, Narisara, Hernandez-Vargas, Esteban A. and Bode, Helge B.: (2019) Cyclo(tetrahydroxybutyrate) production is sufficient to distinguish between Xenorhabdus and Photorhabdus isolates in Thailand, ENVIRONMENTAL MICROBIOLOGY, 21 (8), pp. 2921–2932.

Macia-Vicente, Jose G., Shi, Yan-Ni, Cheikh-Ali, Zakaria, Gruen, Peter, Glynou, Kyriaki, Kia, Sevda Haghi, Piepenbring, Meike and Bode, Helge B.: (2018) Metabolomics-based chemotaxonomy of root endophytic fungi for natural products discovery, ENVIRONMENTAL MICROBIOLOGY, 20 (3), pp. 1253–1270.

Grammbitter, Gina L. C., Shi, Yi-Ming, Shi, Yan-Ni, Vemulapalli, Sahithya P. B., Richter, Christian, Schwalbe, Harald, Alanjary, Mohammad, Schüffler, Anja, Witt, Matthias, Griesinger, Christian and Bode, Helge B.: (2020) The chemical structure of widespread microbial aryl polyene lipids, bioRxiv: the preprint server for biology.