Publications

Brueck, M.; Berghoff, B. A.; Schindler, D.: In silico design, in vitro construction and in vivo application of synthetic small regulatory RNAs in bacteria. (2023)

Philipp, N.; Brinkmann, C. K.; Georg, J.; Schindler, D.; Berghoff, B. A.: DIGGER-Bac: prediction of seed regions for high-fidelity construction of synthetic small RNAs in bacteria. Bioinformatics 39 (5), btad285 (2023)

Ramming, L.; Stukenberg, D.; Sanchez Olmos, M. d. C.; Becker, A.; Schindler, D.: DNA replication is not a limiting factor for the rapid growth of Vibrio natriegens. (2023)

Steube, N.; Moldenhauer, M.; Weiland, P.; Saman, D.; Kilb, A.; Ramírez Rojas, A. A.; Garg, S.; Schindler, D.; Graumann, P. L.; Benesch, J. L. P. et al.; Bange, G.; Friedrich, T.; Hochberg, G. K. A.: Fortuitously compatible protein surfaces primed allosteric control in cyanobacterial photoprotection. Nature Ecology & Evolution 7, pp. 756 - 767 (2023)

Ramírez Rojas, A. A.; Swidah, R.; Schindler, D.: Microbes of traditional fermentation processes as synthetic biology chassis to tackle future food challenges. Front Bioeng Biotechnol 10, p. 982975 (2022)

Jiang, S.; Luo, Z.; Yu, K.; Zhao, S.; Cai, Z.; Yu, W.; Wang, H.; Cheng, L.; Liang, Z.; Gao, H. et al.; Monti, M.; Schindler, D.; Huang, L.; Zeng, C.; Zhang, W.; Zhou, C.; Tang, Y.; Li, T.; Ma, Y.; Cai, Y.; Boeke, J. D.; Dai, J.: Reconstruct a eukaryotic chromosome arm by de novo design and synthesis. (2022)

Koebel, T. S.; Palhares, R. M.; Fromm, C.; Szymanski, W. G.; Angelidou, G.; Glatter, T.; Georg, J.; Berghoff, B. A.; Schindler, D.: An Easy-to-Use Plasmid Toolset for Efficient Generation and Benchmarking of Synthetic Small RNAs in Bacteria. ACS SYNTHETIC BIOLOGY 11 (9), pp. 2989 - 3003 (2022)

Lindeboom, T. A.; Olmos, M. d. C. S.; Schulz, K.; Brinkmann, C. K.; Rojas, A. A. R.; Hochrein, L.; Schindler, D.: L-SCRaMbLE creates large-scale genome rearrangements in synthetic Sc2.0 chromosomes. (2022)

Schindler, D.; Walker, R. S.K.; Jiang, S.; Brooks, A. N.; Wang, Y.; Müller, C. A.; Cockram, C.; Luo, Y.; García, A.; Schraivogel, D. et al.; Mozziconacci, J.; Blount, B. A.; Cai, J.; Ogunlana, L.; Liu, W.; Jönsson, K.; Abramczyk, D.; Garcia-Ruiz, E.; Turowski, T. W.; Swidah, R.; Ellis, T.; Antequera, F.; Shen, Y.; Nieduszynski, C. A.; Koszul, R.; Dai, J.; Steinmetz, L. M.; Boeke, J. D.; Cai, Y.: Design, Construction, and Functional Characterization of a tRNA Neochromosome in Yeast. (2022)

Shen, Y.; Gao, F.; Wang, Y.; Wang, Y.; Zheng, J.; Gong, J.; Zhang, J.; Luo, Z.; Schindler, D.; Deng, Y. et al.; Ding, W.; Lin, T.; Swidah, R.; Zhao, H.; Jiang, S.; Zeng, C.; Chen, S.; Chen, T.; Wang, Y.; Luo, Y.; Mitchell, L.; Bader, J. S.; Zhang, G.; Shen, X.; Wang, J.; Fu, X.; Dai, J.; Boeke, J. D.; Yang, H.; Xu, X.; Cai, Y.: Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast. (2022)

Ong, J. Y.; Swidah, R.; Monti, M.; Schindler, D.; Dai, J.; Cai, Y.: SCRaMbLE: A Study of Its Robustness and Challenges through Enhancement of Hygromycin B Resistance in a Semi-Synthetic Yeast. Bioengineering-Basel 8 (3), pp. 42 - Article No.: 42 (2021)

Luo, Z.; Yu, K.; Xie, S.; Monti, M.; Schindler, D.; Fang, Y.; Zhao, S.; Liang, Z.; Jiang, S.; Luan, M. et al.; Xiao, C.; Cai, Y.; Dai, J.: Compacting a synthetic yeast chromosome arm. GENOME BIOLOGY 22 (1), 5 (2021)

Schindler, D.: Genetic Engineering and Synthetic Genomics in Yeast to Understand Life and Boost Biotechnology. Bioengineering-Basel 7 (4), pp. 137 - Article No.: 137 (2020)

Zhao, Y.; Yao, Z.; Ploessl, D.; Ghosh, S.; Monti, M.; Schindler, D.; Gao, M.; Cai, Y.; Qiao, M.; Yang, C. et al.; Cao, M.; Shao, Z.: Leveraging the Hermes Transposon to Accelerate the Development of Nonconventional Yeast-based Microbial Cell Factories. ACS SYNTHETIC BIOLOGY 9 (7), pp. 1736 - 1752 (2020)

Bruhn, M.; Schindler, D.; Kemter, F. S.; Wiley, M. R.; Chase, K.; Koroleva, G. I.; Palacios, G.; Sozhamannan, S.; Waldminghaus, T.: Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome. FRONTIERS IN MICROBIOLOGY 9, 2932 (2018)

Schindler, D.; Dai, J.; Cai, Y.: Synthetic genomics: a new venture to dissect genome fundamentals and engineer new functions. CURRENT OPINION IN CHEMICAL BIOLOGY 46, pp. 56 - 62 (2018)

Schallopp, N.; Milbredt, S.; Sperlea, T.; Kemter, F. S.; Bruhn, M.; Schindler, D.; Waldminghaus, T.: Establishing a System for Testing Replication Inhibition of the Vibrio cholerae Secondary Chromosome in Escherichia coli. ANTIBIOTICS-BASEL 7 (1), 3 (2018)

Zumkeller, C.; Schindler, D.; Waldminghaus, T.: Modular Assembly of Synthetic Secondary Chromosomes. In: BACTERIAL CHROMATIN: Methods and Protocols, pp. 71 - 94. (2018)

Messerschmidt, S. J.; Schindler, D.; Zumkeller, C. M.; Kemter, F. S.; Schallopp, N.; Waldminghaus, T.: Optimization and characterization of the synthetic secondary chromosome synVicII in Escherichia coli. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 4, 96 (2016)

Schindler, D.; Milbredt, S.; Sperlea, T.; Waldminghaus, T.: Design and Assembly of DNA Sequence Libraries for Chromosomal Insertion in Bacteria Based on a Set of Modified MoClo Vectors. ACS SYNTHETIC BIOLOGY 5 (12), pp. 1362 - 1368 (2016)

Schindler, D.; Waldminghaus, T.: Synthetic chromosomes. FEMS MICROBIOLOGY REVIEWS 39 (6), pp. 871 - 891 (2015)

Messerschmidt, S. J.; Kemter, F. S.; Schindler, D.; Waldminghaus, T.: Synthetic secondary chromosomes in Escherichia coli based on the replication origin of chromosome II in Vibrio cholerae. SI 10 (2), pp. 302 - 314 (2015)

Schindler, D.; Nowrousian, M.: The polyketide synthase gene pks4 is essential for sexual development and regulates fruiting body morphology in Sordaria macrospora. FUNGAL GENETICS AND BIOLOGY 68, pp. 48 - 59 (2014)

Schindler, D.; Waldminghaus, T.: "Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response. BMC GENOMICS 14, 638 (2013)

Gesing, S.; Schindler, D.; Nowrousian, M.: Suppression subtractive hybridization and comparative expression analysis to identify developmentally regulated genes in filamentous fungi. JOURNAL OF BASIC MICROBIOLOGY 53 (9), pp. 742 - 751 (2013)

Gesing, S.; Schindler, D.; Fraenzel, B.; Wolters, D.; Nowrousian, M.: The histone chaperone ASF1 is essential for sexual development in the filamentous fungus Sordaria macrospora. MOLECULAR MICROBIOLOGY 84 (4), pp. 748 - 765 (2012)