Publications of Yi-Ming Shi

Meesil, Wipanee, Muangpat, Paramaporn, Sitthisak, Sutthirat, Rattanarojpong, Triwit, Chantratita, Narisara, Machado, Ricardo A. R., Shi, Yi-Ming, Bode, Helge B., Vitta, Apichat and Thanwisai, Aunchalee: (2023) Genome mining reveals novel biosynthetic gene clusters in entomopathogenic bacteria, Scientific Reports, London, UK, Nature Publishing Group, 13.

Shi, Y.-M., Crames, J. J., Czech, L., Bozhüyük, K. A. J., Shi, Y.-N., Hirschmann, M., Lamberth, S., Claus, P., Paczia, N., Ruckert, C., Kalinowski, J., Bange, G. and Bode, H. B.: (2022) Genome mining enabled by biosynthetic characterization uncovers a class of benzoxazolinate-containing natural products in diverse bacteria, Angewandte Chemie, International Edition in English, Weinheim, Wiley-VCH, 61 (51).

Shi, Y.-M., Hirschmann, M., Shi, Y.-N. and Bode, H. B.: (2022) Cleavage off-loading and post-assembly-line conversions yield products with unusual termini during biosynthesis, ACS Chemical Biology, Washington, D.C., American Chemical Society, 17 (8), pp. 2221–2228.

Shi, Y.-M., Hirschmann, M., Shi, Y.-N., Ahmed, S., Abebew, D., Tobias, N. J., Grun, P., Crames, J. J., Pöschel, L., Kuttenlochner, W., Richter, C., Herrmann, J., Muller, R., Thanwisai, A., Pidot, S. J., Stinear, T. P., Groll, M., Kim, Y. and Bode, H. B.: (2022) Global analysis of biosynthetic gene clusters reveals conserved and unique natural products in entomopathogenic nematode-symbiotic bacteria, Nature Chemistry, London, UK, Nature Publishing Group, 14, April, pp. 701–712.

Zolfaghariyan, Sahar, Shakeri, Abolfazl, Asili, Javad, Tarighi, Saeed, Grün, Peter, Shi, Yi-Ming, Bode, Helge B. and Karimi, Javad: (2022) Cyclic depsipeptides and linear peptides with cytotoxic and antiphytopathogenic activities from symbiotic bacteria of Xenorhabdus (Enterobacteriales: Morganellaceae) genus, Annals of the Entomological Society of America, College Park, Md., Entomological Society of America, 116 (2), pp. 114–124.

Reyes-Fernandez, Esmeralda Z., Shi, Yi-Ming, Gruen, Peter, Bode, Helge B. and Boelker, Michael: (2021) An unconventional melanin biosynthesis pathway in Ustilago maydis, Applied and Environmental Microbiology, American Society for Microbiology (ASM), 87 (3).

Machado, Ricardo A. R., Thoenen, Lisa, Arce, Carla C. M., Theepan, Vanitha, Prada, Fausto, Wuethrich, Daniel, Robert, Christelle A. M., Vogiatzaki, Evangelia, Shi, Yi-Ming, Schaeren, Olivier P., Notter, Matheus, Bruggmann, Remy, Hapfelmeier, Siegfried, Bode, Helge B. and Erb, Matthias: (2020) Engineering bacterial symbionts of nematodes improves their biocontrol potential to counter the western corn rootworm (Feb, 10.1038/s41587-020-0419-1, 2020), NATURE BIOTECHNOLOGY, 38 (5), pp. 649–649.

Machado, Ricardo A. R., Thonen, Lisa, Arce, Carla C. M., Theepan, Vanitha, Prada, Fausto, Wuthrich, Daniel, Robert, Christelle A. M., Vogiatzaki, Evangelia, Shi, Yi-Ming, Schaeren, Olivier P., Notter, Matheus, Bruggmann, Remy, Hapfelmeier, Siegfried, Bode, Helge B. and Erb, Matthias: (2020) Engineering bacterial symbionts of nematodes improves biocontrol potential of the western corn rootworm, NATURE BIOTECHNOLOGY, 38 (5).

Bode, Edna, Heinrich, Antje K., Hirschmann, Merle, Abebew, Desalegne, Shi, Yan-Ni, Tien Vo, Duy, Wesche, Frank, Shi, Yi-Ming, Gruen, Peter, Simonyi, Svenja, Keller, Nadine, Engel, Yvonne, Wenski, Sebastian, Bennet, Reuel, Beyer, Sophie, Bischoff, Iris, Buaya, Anthony, Brandt, Sophie, Cakmak, Ibrahim, Cimen, Harun, Eckstein, Simone, Frank, Denia, Fuerst, Robert, Gand, Martin, Geisslinger, Gerd, Hazir, Selcuk, Henke, Marina, Heermann, Ralf, Lecaudey, Virginie, Schaefer, Wilhelm, Schiffmann, Susanne, Schueffler, Anja, Schwenk, Rebecca, Skaljac, Marisa, Thines, Eckhard, Thines, Marco, Ulshoefer, Thomas, Vilcinskas, Andreas, Wichelhaus, Thomas A. and Bode, Helge B.: (2019) Promoter Activation in Delta hfq Mutants as an Efficient Tool for Specialized Metabolite Production Enabling Direct Bioactivity Testing, ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 58 (52), pp. 18957–18963.

Drummond, Laura, Kschowak, Max J., Breitenbach, Juergen, Wolff, Hendrik, Shi, Yi-Ming, Schrader, Jens, Bode, Helge B., Sandmann, Gerhard and Buchhaupt, Markus: (2019) Expanding the Isoprenoid Building Block Repertoire with an IPP Methyltransferase from Streptomyces monomycini, ACS SYNTHETIC BIOLOGY, 8 (6), pp. 1303–1313.

Grammbitter, Gina L. C., Schmalhofer, Maximilian, Karimi, Kudratullah, Shi, Yi-Ming, Schoener, Tim A., Tobias, Nicholas J., Morgner, Nina, Groll, Michael and Bode, Helge B.: (2019) An Uncommon Type II PKS Catalyzes Biosynthesis of Aryl Polyene Pigments, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 141 (42), pp. 16615–16623.

Shi, Yi-Ming, Brachmann, Alexander O., Westphalen, Margaretha A., Neubacher, Nick, Tobias, Nicholas J. and Bode, Helge B.: (2019) Dual phenazine gene clusters enable diversification during biosynthesis, NATURE CHEMICAL BIOLOGY, 15 (4), pp. 331-+.

Shi, Yan-Ni, Pusch, Stefan, Shi, Yi-Ming, Richter, Christian, Macia-Vicente, Jose G., Schwalbe, Harald, Kaiser, Marcel, Opatz, Till and Bode, Helge B.: (2019) (+/-)-Alternarlactones A and B, Two Antiparasitic Alternariol-like Dimers from the Fungus Alternaria alternata P1210 Isolated from the Halophyte Salicornia sp., JOURNAL OF ORGANIC CHEMISTRY, 84 (17), pp. 11203–11209.

Tobias, Nicholas J., Parra-Rojas, Cesar, Shi, Yan-Ni, Shi, Yi-Ming, Simonyi, Svenja, Thanwisai, Aunchalee, Vitta, Apichat, Chantratita, Narisara, Hernandez-Vargas, Esteban A. and Bode, Helge B.: (2019) Cyclo(tetrahydroxybutyrate) production is sufficient to distinguish between Xenorhabdus and Photorhabdus isolates in Thailand, ENVIRONMENTAL MICROBIOLOGY, 21 (8), pp. 2921–2932.

Wang, Gaoyan, Zhao, Zhiying, Ke, Jing, Engel, Yvonne, Shi, Yi-Ming, Robinson, David, Bingol, Kerem, Zhang, Zheyun, Bowen, Benjamin, Louie, Katherine, Wang, Bing, Evans, Robert, Miyamoto, Yu, Cheng, Kelly, Kosina, Suzanne, De Raad, Markus, Silva, Leslie, Luhrs, Alicia, Lubbe, Andrea, Hoyt, David W., Francavilla, Charles, Otani, Hiroshi, Deutsch, Samuel, Washton, Nancy M., Rubin, Edward M., Mouncey, Nigel J., Visel, Axel, Northen, Trent, Cheng, Jan-Fang, Bode, Helge B. and Yoshikuni, Yasuo: (2019) CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria, NATURE MICROBIOLOGY, 4 (12), pp. 2498–2510.

Shi, Yi-Ming and Bode, Helge B.: (2018) Chemical language and warfare of bacterial natural products in bacteria-nematode-insect interactions, NATURAL PRODUCT REPORTS, 35 (4), pp. 309–335.

Shi, Yi-Ming, Richter, Christian, Challinor, Victoria L., Gruen, Peter, del Rio, Antonio Girela, Kaiser, Marcel, Schueffler, Anja, Piepenbring, Meike, Schwalbe, Harald and Bode, Helge B.: (2018) Georatusin, a Specific Antiparasitic Polyketide-Peptide Hybrid from the Fungus Geomyces auratus, ORGANIC LETTERS, 20 (6), pp. 1563–1567.

Tobias, Nicholas Jay, Shi, Yi-Ming and Bode, Helge B.: (2018) Refining the Natural Product Repertoire in Entomopathogenic Bacteria, TRENDS IN MICROBIOLOGY, 26 (10), pp. 833–840.

Cai, Xiaofeng, Shi, Yi-Ming, Poehlmann, Nicole, Revermann, Ole, Bahner, Isabel, Pidot, Sacha J., Wesche, Frank, Lackner, Helmut, Buechel, Claudia, Kaiser, Marcel, Richter, Christian, Schwalbe, Harald, Stinear, Timothy P., Zeeck, Axel and Bode, Helge B.: (2017) Structure and Biosynthesis of Isatropolones, Bioactive Amine-Scavenging Fluorescent Natural Products from Streptomyces Go66, ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 56 (18), pp. 4945–4949.

Tobias, Nicholas J., Wolff, Hendrik, Djahanschiri, Bardya, Grundmann, Florian, Kronenwerth, Max, Shi, Yi-Ming, Simonyi, Svenja, Gruen, Peter, Shapiro-Ilan, David, Pidot, Sacha J., Stinear, Timothy P., Ebersberger, Ingo and Bode, Helge B.: (2017) Natural product diversity associated with the nematode symbionts Photorhabdus and Xenorhabdus, NATURE MICROBIOLOGY, 2 (12), pp. 1676–1685.