Publications of Seigo Shima

Shima, Seigo, Pilak, Oliver, Vogt, Sonja, Schick, Michael, Stagni, Marco S., Meyer-Klaucke, Wolfram, Warkentin, Eberhard, Thauer, Rudolf K. and Ermler, Ulrich: (2008) The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site, Science, Washington, D.C., American Association for the Advancement of Science, 321 (5888), pp. 572–575.

Guo, Yisong, Wang, Hongxin, Xiao, Yuming, Vogt, Sonja, Thauer, Rudolf K., Shima, Seigo, Volkers, Phillip I., Rauchfuss, Thomas B., Pelmenschikov, Vladimir, Case, David A., Alp, Ercan E., Sturhahn, Wolfgang, Yoda, Yoshitaka and Cramer, Stephen P.: (2008) Characterization of the Fe site in iron-sulfur cluster-free hydrogenase (Hmd) and of a model compound via nuclear resonance vibrational spectroscopy (NRVS), Inorganic Chemistry, Washington, DC, American Chemical Society, 47 (10), pp. 3969–3977.

Ettwig, Katharina F., Shima, Seigo, van de Pas-Schoonen, Katinka T., Kahnt, Jörg, Medema, Marnix H., op den Camp, Huub J. M., Jetten, Mike S. M. and Strous, Marc: (2008) Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea, Environmental Microbiology, 10 (11), pp. 3164–3173.

Shima, Seigo: (2008) [Structure of [Fe]-hydrogenase and the convergent evolution of the active site of hydrogenases], Seikagaku, 80 (9), pp. 846–849.

Vogt, Sonja, Lyon, Erica, Shima, Seigo and Thauer, Rudolf K.: (2008) The exchange activities of [Fe] hydrogenase (iron-sulfur-cluster-free hydrogenase) from methanogenic archaea in comparison with the exchange activities of [FeFe] and [NiFe] hydrogenases., Journal of Biological Inorganic Chemistry, Berlin, Springer, 13 (1), pp. 97–106.

Kahnt, Joerg, Buchenau, Baerbel, Mahlert, Felix, Krueger, Martin, Shima, Seigo and Thauer, Rudolf K.: (2007) Post-translational modifications in the active site region of methyl-coenzyme M reductase from methanogenic and methanotrophic archaea., The FEBS Journal, Wiley-Blackwell, 274, August, pp. 4913–4921.

Seedorf, Henning, Hagemeier, Christoph, Shima, Seigo, Thauer, Rudolf K., Warkentin, Eberhard and Ermler, Ulrich: (2007) Structure of coenzyme F₄₂₀ H₂ oxidase (FprA), a di-iron flavoprotein from methanogenic Archaea catalyzing the reduction of O₂ to H₂ O., The FEBS Journal, Wiley-Blackwell, 274, March, pp. 1588–1599.

Korbas, Malgorzata, Vogt, Sonja, Meyer-Klaucke, Wolfram, Bill, Eckhard, Lyon, Erica, Thauer, Rudolf K. and Shima, Seigo: (2006) The Iron-Sulfur Cluster-free Hydrogenase (Hmd) Is a Metalloenzyme with a Novel Iron Binding Motif., Journal of Biological Chemistry, Amsterdam, Elsevier, 281 (41), pp. 30804–30813.

Pilak, O., Mamat, B, Vogt, S., Hagemeier, C. H., Thauer, R. K., Shima, S., Vonrhein, C, Warkentin, E and Ermler, U: (2006) The crystal structure of the apoenzyme of the iron-sulphur cluster-free hydrogenase, Journal of Molecular Biology, Elsevier, 358 (3), pp. 798–809.

Acharya, Priyamvada, Eberhard, Warkentina, Ulrich, Ermler, Rudolf, Thauer and Shima, Seigo: (2006) The Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with its Coenzymes., Journal of Molecular Biology, Elsevier, 357, March, pp. 870–879.

Shima, S. and Thauer, R. K.: (2005) Methyl-coenzyme M reductase and the anaerobic oxidation of methane in methanotrophic Archaea, Current Opinion in Microbiology, London, Elsevier Current Trends, 8 (6), pp. 643–648.

Shima, S., Lyon, E. J., Thauer, R. K., Mienert, B. and Bill, E.: (2005) Mössbauer studies of the iron-sulfur cluster-free hydrogenase: The electronic state of the mononuclear Fe active site, Journal of the American Chemical Society, Washington, DC, American Chemical Society, 127 (29), pp. 10430–10435.

Aufhammer, S. W., Warkentin, E., Ermler, U., Hagemeier, C. H., Thauer, R. K. and Shima, S.: (2005) Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F₄₂₀: Architecture of the F₄₂₀/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family, Protein Science, Hoboken, New Jersey, Vereinigte Staaten, Wiley, 14 (7), pp. 1840–1849.

Warkentin, E., Hagemeier, C. H., Shima, S., Thauer, R. K. and Ermler, U.: (2005) The structure of F₄₂₀-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure, Acta Crystallographica Section D - Structural Biology, England, International Union of Crystallography (co-published with Wiley), 61, February, pp. 198–202.

Sakasegawa, S. I., Hagemeier, C. H., Thauer, R. K., Essen, L. O. and Shima, S.: (2004) Structural and functional analysis of the gpsA gene product of Archaeoglobus fulgidus: A glycerol-3-phosphate dehydrogenase with an unusual NADP(+) preference, Protein Science, Hoboken, New Jersey, Vereinigte Staaten, Wiley, 13 (12), pp. 3161–3171.

Lyon, E. J., Shima, S., Boecher, R., Thauer, R. K., Grevels, F. W., Bill, E., Roseboom, W. and Albracht, S. P. J.: (2004) Carbon monoxide as an intrinsic ligand to iron in the active site of the iron-sulfur-cluster-free hydrogenase H₂-Forming methylenetetrahydromethanopterin dehydrogenase as revealed by infrared spectroscopy, The Journal of Organic Chemistry, Washington, D.C., American Chemical Society, 126 (43), pp. 14239–14248.

Seedorf, H., Dreisbach, A., Hedderich, R., Shima, S. and Thauer, R. K.: (2004) F₄₂₀H₂ oxidase (FprA) from Methanobrevibacter arboriphilus, a coenzyme F₄₂₀-dependent enzyme involved in O₂ detoxification, Archives of Microbiology, Heidelberg, Springer-Verlag, 182 (2-3), pp. 126–137.

Aufhammer, Stephan W., Warkentin, Eberhard, Berk, Holger, Shima, Seigo, Thauer, Rudolf K. and Ermler, Ulrich: (2004) Coenzyme binding in F₄₂₀-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family, Structure, London, Cell Press, 12 (3), pp. 361–370.

Lyon, E. J., Shima, S., Buurman, G., Chowdhuri, S., Batschauer, A., Steinbach, K. and Thauer, R. K.: (2004) UV-A/blue-light inactivation of the 'metal-free' hydrogenase (Hmd) from methanogenic archaea - The enzyme contains functional iron after all, European Journal of Biochemistry, Wiley-Blackwell, England, 271 (1), pp. 195–204.

Shima, S., Lyon, E. J., Sordel-Klippert, M. S., Kauss, M., Kahnt, J., Thauer, R. K., Steinbach, K., Xie, X. L., Verdier, L. and Griesinger, C.: (2004) The cofactor of the iron-sulfur cluster free hydrogenase Hmd: Structure of the light-inactivation product, Angewandte Chemie International Edition, Weinheim, Wiley-VCH, 43 (19), pp. 2547–2551.