Journal Article (139)

2003
Journal Article
Krüger, M.; Meyerdierks, A.; Glockner, F. O.; Amann, R.; Widdel, F.; Kube, M.; Reinhardt, R.; Kahnt, R.; Böcher, R.; Thauer, R. K. et al.; Shima, S.: A conspicuous nickel protein in microbial mats that oxidize methane anaerobically. Nature 426 (6968), pp. 878 - 881 (2003)
Journal Article
Hagemeier, C. H.; Shima, S.; Thauer, R. K.; Bourenkov, G.; Bartunik, H. D.; Ermler, U.: Coenzyme F-420-dependent methylenetetrahydro-methanopterin dehydrogenase (Mtd) from Methanopyrus kandleri: A methanogenic enzyme with an unusual quarternary structure. Journal of Molecular Biology 332 (5), pp. 1047 - 1057 (2003)
Journal Article
Hagemeier, C. H.; Shima, S.; Warkentin, E.; Thauer, R. K.; Ermler, U.: Coenzyme F-420-dependent methylenetetrahydromethanopterin dehydrogenase from Methanopyrus kandleri: the selenomethionine-labelled and non-labelled enzyme crystallized in two different forms. Acta Crystallographica Section D-Biological Crystallography 59, pp. 1653 - 1655 (2003)
2002
Journal Article
Mamat, B.; Roth, A.; Grimm, C.; Ermler, U.; Tziatzios, C.; Schubert, D.; Thauer, R. K.; Shima, S.: Crystal structures and enzymatic properties of three formyltransferases from archaea: Environmental adaptation and evolutionary relationship. Protein Science 11 (9), pp. 2168 - 2178 (2002)
Journal Article
Shima, S.; Warkentin, E.; Thauer, R. K.; Ermler, U.: Structure and function of enzymes involved in the methanogenic pathway utilizing carbon dioxide and molecular hydrogen. Journal of Bioscience and Bioengineering 93 (6), pp. 519 - 530 (2002)
2001
Journal Article
Warkentin, E.; Mamat, B.; Sordel-Klippert, M.; Wicke, M.; Thauer, R. K.; Iwata, M.; Iwata, S.; Ermler, U.; Shima, S.: Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound. The EMBO Journal 20 (23), pp. 6561 - 6569 (2001)
Journal Article
Grabarse, W.; Mahlert, F.; Duin, E. C.; Goubeaud, M.; Shima, S.; Thauer, R. K.; Lamzin, V.; Ermler, U.: On the mechanism of biological methane formation: structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding. Journal of Molecular Biology (London) 309 (1), pp. 315 - 330 (2001)
Journal Article
Shima, S.; Sordel-Klippert, M.; Brioukhanov, A.; Netrusov, A.; Linder, D.; Thauer, R. K.: Characterization of a heme-dependent catalase from Methanobrevibacter arboriphilus. Applied and Environmental Microbiology 67 (7), pp. 3041 - 3045 (2001)
Journal Article
Shima, S.; Thauer, R. K.: Tetrahydromethanopterin-specific enzymes from Methanopyrus kandleri. HYPERTHERMOPHILIC ENZYMES, PT B, pp. 317 - 353 (2001)
2000
Journal Article
Grabarse, W.; Mahlert, F.; Shima, S.; Thauer, R. K.; Ermler, U.: Comparison of three methyl-coenzyme M reductases from phylogenetically distant organisms: unusual amino acid modification, conservation and adaptation. Journal of Molecular Biology (London) 303 (2), pp. 329 - 344 (2000)
Journal Article
Shima, S.; Warkentin, E.; Grabarse, W.; Sordel, M.; Wicke, M.; Thauer, R. K.; Ermler, U.: Structure of coenzyme F420 dependent methylenetetrahydromethanopterin reductase from two methanogenic archaea. Journal of Molecular Biology (London) 300 (4), pp. 935 - 950 (2000)
Journal Article
Selmer, T.; Kahnt, J.; Goubeaud, M.; Shima, S.; Grabarse, W.; Ermler, U.; Thauer, R. K.: The Biosynthesis of Methylated Amino Acids in the Active Site Region of Methyl-coenzyme M Reductase. The Journal of Biological Chemistry 275 (6), pp. 3755 - 3760 (2000)
Journal Article
Brioukhanov, A.; Netrusov, A.; Sordel, M.; Thauer, R.; Shima, S.: Protection of Methanosarcina barkeri against oxidative stress: identification and characterization of an iron superoxide dismutase. Archives of Microbiology 174 (3), pp. 213 - 216 (2000)
Journal Article
Buurman, G.; Shima, S.; Thauer, R. K.: The metal-free hydrogenase from methanogenic archaea: evidence for a bound cofactor. FEBS LETTERS 485 (2-3), pp. 200 - 204 (2000)
Journal Article
Shima, S.; Thauer, R. K.; Ermler, U.; Durchschlag, H.; Tziatzios, C.; Schubert, D.: A mutation affecting the association equilibrium of formyltransferase from the hyperthermophilic Methanopyrus kandleri and its influence on the enzyme's activity and thermostability. EUROPEAN JOURNAL OF BIOCHEMISTRY 267 (22), pp. 6619 - 6623 (2000)
1999
Journal Article
Grabarse, W.; Vaupel, M.; Vorholt, J. A.; Shima, S.; Thauer, R. K.; Wittershagen, A.; Bourenkov, G.; Bartunik, H. D.; Ermler, U.: The crystal structure of methenyltetrahydromethanopterin cyclohydrolase from the hyperthermophilic archaeon Methanopyrus kandleri. Structure 7 (10), pp. 1257 - 1268 (1999)
Journal Article
Shima, S.; Netrusov, A.; Sordel, M.; Wicke, M.; Hartmann, G.; Thauer, R. K.: Purification, characterization, and primary structure of a monofunctional catalase from Methanosarcina barkeri. Archives of Microbiology 171 (5), pp. 317 - 323 (1999)
1998
Journal Article
Ermler, U.; Grabarse, W.; Shima, S.; Goubeaud, M.; Thauer, R. K.: Active sites of transition-metal enzymes with a focus on nickel. Current Opinion in Structural Biology 8 (6), pp. 749 - 758 (1998)
Journal Article
Shima, S.; Tziatzios, C.; Schubert, D.; Fukada, H.; Takahashi, K.; Ermler, U.; Thauer, R. K.: Lyotropic‐salt‐induced changes in monomer/dimer/tetramer association equilibrium of formyltransferase from the hyperthermophilic Methanopyrus kandleri in relation to the activity and thermostability of the enzyme. European Journal of Biochemistry 258 (1), pp. 85 - 92 (1998)
Journal Article
Ermler, U.; Grabarse, W.; Shima, S.; Goubeaud, M.; Thauer, R. K.: Mechanismus der mikrobiellen Methanbildung. Biospektrum (4), pp. 20 - 24 (1998)
Journal Article
Shima, S.: Unique structures of the enzymes from methanogens. Seibutsu-Kogaku Kaishi (76), 353 (1998)
Journal Article
Shima, S.: [Mechanism of biological methane formation structure and function of methyl-coenzyme M reductase]. Protein, Nucleic acid and Enzyme (43), pp. 1461 - 1467 (1998)
Journal Article
Shima, S.; Herault, D.; Berkessel, A.; Thauer, R. K.: Activation and thermostabilization effects of cyclic 2,3-diphosphoglycerate on enzymes from the hyperthermophilic Methanopyrus kandleri. ARCHIVES OF MICROBIOLOGY 170 (6), pp. 469 - 472 (1998)
1997
Journal Article
Ermler, U.; Grabarse, W.; Shima, S.; Goubeaud, M.; Thauer, R. K.: Crystal structure of methyl-coenzyme M reductase: the key enzyme of biological methane formation. Science 278 (5342), pp. 1457 - 1462 (1997)
Journal Article
Ermler, U.; Merckel, M. C.; Thauer, R. K.; Shima, S.: Formylmethanofuran: tetrahydromethanopterin formyltransferase from Methanopyrus kandleri — new insights into salt-dependence and thermostability. Structure 5 (5), pp. 635 - 646 (1997)
Journal Article
Shima, S.; Goubeaud, M.; Vinzenz, D.; Thauer, R. K.; Ermler, U.: Crystallization and preliminary X-ray diffraction studies of methyl-coenzyme M reductase from methanobacterium thermoautotrophicum. Journal of Biochemistry 121 (5), pp. 829 - 830 (1997)
1996
Journal Article
Shima, S.; Thauer, R. K.; Michel, H.; Ermler, U.: Crystallization and preliminary X‐ray diffraction studies of formylmethanofuran: Tetrahydromethanopterin formyltransferase from Methanopyrus kandleri. Proteins: Structure, Function, and Bioinformatics 26 (1), pp. 118 - 120 (1996)
Journal Article
Kunow, J.; Shima, S.; Vorholt, J. A.; Thauer, R. K.: Primary structure and properties of the formyltransferase from the mesophilic Methanosarcina barkeri: Comparison with the enzymes from thermophilic and hyperthermophilic methanogens. ARCHIVES OF MICROBIOLOGY 165 (2), pp. 97 - 105 (1996)
1995
Journal Article
Shima, S.; Weiss, D.; Thauer, R. K.: FORMYLMETHANOFURAN - TETRAHYDROMETHANOPTERIN FORMYLTRANSFERASE (FTR) FROM THE HYPERTHERMOPHILIC METHANOPYRUS-KANDLERI - CLONING, SEQUENCING AND FUNCTIONAL EXPRESSION OF THE FTR GENE AND ONE-STEP PURIFICATION OF THE ENZYME OVERPRODUCED IN ESCHERICHIA-COLI. EUROPEAN JOURNAL OF BIOCHEMISTRY 230 (3), pp. 906 - 913 (1995)
1994
Journal Article
Shima, S.; Yanagi, M.; Saiki, H.: The phylogenetic position of Hydrogenobacter acidophilus based on 16S rRNA sequence analysis. FEMS Microbiology Letters 119 (1-2), pp. 119 - 122 (1994)
1993
Journal Article
Suzuki, K.; Shima, S.: Hydrogenobacter acidophilus: Is its ancestor a missing-link between the Bacteria and the Archaea? RIKEN review (3), pp. 3 - 4 (1993)
Journal Article
Shima, S.: Cellulases of clostridia: genetics and biochemistry. The Heredity (43), pp. 56 - 60 (1993)
Journal Article
Shima, S.; Igarashi, Y.; Kodama, T.: Purification and properties of two truncated endoglucanases produced in Escherichia coli harbouring Clostridium cellulolyticum endoglucanase gene celCCD. Appl Microbiol Biotechnol 38 (6), pp. 750 - 754 (1993)
Journal Article
Shima, S.; Suzuki, K.-i.: Hydrogenobacter acidophilus sp. nov., a Thermoacidophilic, Aerobic, Hydrogen-Oxidizing Bacterium Requiring Elemental Sulfur for Growth. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 43 (4), pp. 703 - 708 (1993)
1991
Journal Article
Shima, S.; IGARASHI, Y.; KODAMA, T.: NUCLEOTIDE-SEQUENCE ANALYSIS OF THE ENDOGLUCANASE-ENCODING GENE, CELCCD, OF CLOSTRIDIUM-CELLULOLYTICUM. GENE 104 (1), pp. 33 - 38 (1991)
Journal Article
Shima, S.; IGARASHI, Y.; KODAMA, T.: MOLECULAR-CLONING OF A NEW ENDOGLUCANASE GENE FROM CLOSTRIDIUM-CELLULOLYTICUM AND ITS EXPRESSION IN ESCHERICHIA-COLI. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 35 (2), pp. 233 - 236 (1991)
1990
Journal Article
Shima, S.: Production of organic materials by electric energy: Utilization of hydrogen bacteria. Nogyodenka (43), pp. 13 - 16 (1990)
Journal Article
Shima, S.: Application of energy-conversion enzymes for hydrogen production and electrodes of fuel cells. Energy forum No. 432 (112) (1990)
1989
Journal Article
Shima, S.; Kato, J.; Igarashi, Y.; Kodama, T.: Cloning and expression of a Clostridium cellobioparum cellulase gene and its excretion from Escherichia coli JM109. Journal of Fermentation and Bioengineering 68 (2), pp. 75 - 78 (1989)
1985
Journal Article
Shima, S.: Utilization of root-nodule bacteria and its ecological problems. Nogyodenka (38), pp. 15 - 17 (1985)

Book Chapter (14)

2018
Book Chapter
Wagner, T.; Ermler, U.; Shima, S.: Tungsten-containing formylmethanofuran dehydrogenas. In: Encyclopedia of Inorganic and Bioinorganic Chemistry (online) (Ed. Messerschmidt, A.). John Wiley and Sons, Inc. (2018)
Book Chapter
Wagner, T.; Watanabe, T.; Shima, S.: Hydrogenotrophic methanogenesis. In: Handbook of Hydrocarbon and Lipid Microbiology Series. Biogenesis of Hydrocarbons (Eds. Stams, A. J. M.; Sousa, D. Z.). Springer, Germany (2018)
2017
Book Chapter
Scheller, S.; Ermler, U.; Shima, S.: Catabolic Pathways and Enzymes Involved in Anaerobic Methane Oxidation. In: Anaerobic Utilization of Hydrocarbons, Oils, and Lipids, in: Handbook of Hydrocarbon and Lipid Microbiology (Ed. Boll, M.). Springer (2017)
Book Chapter
Shima, S.: Methanogenic metabolisms. In: Archaea Biology (Eds. Ishino, Y.; Atomi, H.). Kyoritsu-Shuppan (2017)
Book Chapter
Shima, S.: Catabolic pathways & enzymes involved in the anaerobic oxidation of methane. In: 6-volume Handbook of Hydrocarbon and Lipid Microbiology (Ed. Boll, M.). Springer (2017)
2015
Book Chapter
Shima, S.; Fujishiro, T.; Ermler, U.: Structure and function of [Fe]-hydrogenase and biosynthesis of the FeGP cofactor. In: Biohydrogen, pp. 127 - 144. De Gruyter, Berlin / Munich /Boston (2015)
2014
Book Chapter
Shima, S.: Life under anaerobic conditions: Enzymes involved in hydrogenotrophic methanogenesis. In: Biomolecules under Extreme Environments, pp. 83 - 88 (Ed. The Chemical Society of Japan). Kagakudojin, Kyoto, Japan. (2014)
2009
Book Chapter
Shima, S.; Thauer, R. K.; Ermler, U.: CARBON MONOXIDE AS INTRINSIC LIGAND TO IRON IN THE ACTIVE SITE OF [Fe]-HYDROGENASE. In: Metal-Carbon Bonds in Enzymes and Cofactors, pp. 219 - 240. Royal Society of Chemistry, Cambridge, UK (2009)
2008
Book Chapter
Shima, S.: Functions of methyl-coenzyme M reductase in production and degradation of methane. In: Applied Microbiology, pp. 182 - 183. Asakura Shoten, Tokyo (2008)
2007
Book Chapter
Thauer, R.; Shima, S.: Methyl-coenzyme M reductase in methanogens and methanotrophs. In: Archaea, Evolution, Physiology and Molecuar Biology, pp. 275 - 83. Blackwell Publishing, Inc, Malden, USA (2007)
2006
Book Chapter
Thauer, R. K.; Shima, S.: Methyl-coenzyme M reductase in methanogenic and methanotrophic archaea. In: Archaea Biology (Eds. Garrett, R.; Klenk, H.-P.). Blackwell Publishing, Inc., Malden, USA (2006)
2002
Book Chapter
Shima, S.: Energy metabolism of methanogens. In: Great development of microorganisms, pp. 325 - 333 (Ed. Imanaka, T.). NTS inc., Tokyo (2002)
2001
Book Chapter
Grabarse, W.; Shima, S.; Mahlert, F.; Duin, E. C.; Thauer, R. K.; Ermler, U.: Methyl-coenzyme M reductase. In: Handbook of Metalloproteins, pp. 897 - 914 (Eds. Wieghardt, K.; Huber, R.). John Wiley & sons (2001)
1998
Book Chapter
Shima, S.: Mechanisms of methane formation. In: Biology of the Archaebacteria, pp. 190 - 205 (Eds. Koga, Y.; Kamekura, M.). University of Tokyo Press (1998)
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