Publications

Journal Article (139)

2022
Journal Article
Schaupp, S.; Arriaza Gallardo, F. J.; Pan, H. J.; Kahnt, J.; Angelidou, G.; Paczia, N.; Costa, K.; Hu, X.; Shima, S.: In Vitro Biosynthesis of the [Fe]-Hydrogenase Cofactor Verifies the Proposed Biosynthetic Precursors. Angew Chem Int Ed Engl 61 (22), p. e202200994 (2022)
Journal Article
Watanabe, T.; Shima, S.: A enzyme complex of methanogenic electron-bifurcating and CO2-fixing enzymes. Bioscience & Industry 80 (2), pp. 122 - 123 (2022)
2021
Journal Article
Roux, A.; Talon, R.; Alsalman, Z.; Engilberge, S.; D’Aléo, A.; Di Pietro, S.; Robin, A.; Bartocci, A.; Pilet, G.; Dumont, E. et al.; Wagner, T.; Shima, S.; Riobé, F.; Girard, E.; Maury, O.: Influence of Divalent Cations in the Protein Crystallization Process Assisted by Lanthanide-Based Additives. Inorg. Chem. 60 (20), pp. 15208 - 15214 (2021)
Journal Article
Pan, H.-J.; Huang, G.; Wodrich, M. D.; Tirani, F. F.; Ataka, K.; Shima, S.; Hu, X.: Diversifying Metal-Ligand Cooperative Catalysis in Semi-Synthetic [Mn]-Hydrogenases. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 60 (24), pp. 13350 - 13357 (2021)
Journal Article
Shima, S.; Thauer, R. K.: Methanothermobacter — Biokatalysator für die Energiewende. BIOspektrum 27 (1), pp. 14 - 17 (2021)
Journal Article
Watanabe, T.; Pfeil-Gardiner, O.; Kahnt, J.; Koch, J.; Shima, S.; Murphy, B. J.: Three-megadalton complex of methanogenic electron-bifurcating and CO2-fixing enzymes. SCIENCE 373 (6559), pp. 1151 - 1155 (2021)
Journal Article
Watanabe, T.; Shima, S.: MvhB-type Polyferredoxin as an Electron-transfer Chain in Putative Redox-enzyme Complexes. CHEMISTRY LETTERS 50 (2), pp. 353 - 360 (2021)
2020
Journal Article
Shima, S.; Huang, G.; Wagner, T.; Ermler, U.: Structural Basis of Hydrogenotrophic Methanogenesis. Annual Review of Microbiology 74, pp. 713 - 733 (2020)
Journal Article
Engilberge, S.; Wagner, T.; Carpentier, P.; Girard, E.; Shima, S.: Krypton-derivatization highlights O-2-channeling in a four-electron reducing oxidase. Chemical Communications 56 (74), pp. 10863 - 10866 (2020)
Journal Article
Huang, G.; Wagner, T.; Demmer, U.; Warkentin, E.; Ermler, U.; Shima, S.: The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase. Journal of Molecular Biology (London) 432 (7), pp. 2042 - 2054 (2020)
Journal Article
Huang, G.; Wagner, T.; Ermler, U.; Shima, S.: Methanogenesis involves direct hydride transfer from H2 to an organic substrate. Nature Reviews Chemistry 4 (2), pp. 213 - 221 (2020)
Journal Article
Huang, G.; Arriaza-Gallardo, F. J.; Wagner, T.; Shima, S.: Crystal Structures of [Fe]-Hydrogenase from Methanolacinia paynteri Suggest a Path of the FeGP-Cofactor Incorporation Process. Inorganics 8 (9), 50 (2020)
2019
Journal Article
Hemmann, J. L.; Wagner, T.; Shima, S.; Vorholt, J. A.: Methylofuran is a prosthetic group of the formyltransferase/hydrolase complex and shuttles one-carbon units between two active sites. Proceedings of the National Academy of Sciences of the United States of America 116 (51), pp. 25583 - 25590 (2019)
Journal Article
Watanabe, T.; Wagner, T.; Huang, G.; Kahnt, J.; Ataka, K.; Ermler, U.; Shima, S.: The Bacterial [Fe]‐Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates. Angewandte Chemie International Edition in English 58 (11), pp. 3506 - 3510 (2019)
Journal Article
Engilberge, S.; Wagner, T.; Santoni, G.; Breyton, C.; Shima, S.; Franzetti, B.; Riobe, F.; Maury, O.; Girard, E.: Protein crystal structure determination with the crystallophore, a nucleating and phasing agent. JOURNAL OF APPLIED CRYSTALLOGRAPHY 52, pp. 722 - 731 (2019)
Journal Article
Huang, G.; Wagner, T.; Wodrich, M. D.; Ataka, K.; Bill, E.; Ermler, U.; Hu, X.; Shima, S.: The atomic-resolution crystal structure of activated [Fe]-hydrogenase. Nature Catalysis 2 (6), pp. 537 - 543 (2019)
Journal Article
Ilina, Y.; Lorent, C.; Katz, S.; Jeoung, J.-H.; Shima, S.; Horch, M.; Zebger, I.; Dobbek, H.: X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 58 (51), pp. 18710 - 18714 (2019)
Journal Article
Pan, H.-J.; Huang, G.; Wodrich, M. D.; Tirani, F. F.; Ataka, K.; Shima, S.; Hu, X.: A catalytically active [Mn]-hydrogenase incorporating a non-native metal cofactor. NATURE CHEMISTRY 11 (7), pp. 669 - 675 (2019)
Journal Article
Voegeli, B.; Shima, S.; Erb, T. J.; Wagner, T.: Crystal structure of archaeal HMG-CoA reductase: insights into structural changes of the C-terminal helix of the class-I enzyme. FEBS LETTERS 593 (5), pp. 543 - 553 (2019)
2018
Journal Article
Berhardsgrütter, I.; Vögeli, B.; Wagner, T.; Peter, D.; Cortina, N. S.; Kahnt, J.; Bange, G.; Engilberge, S.; Girard, E.; Riobe, F. et al.; Maury, O.; Shima, S.; Zarzycki, J.; Erb, T. J.: The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite. NATURE CHEMICAL BIOLOGY 14 (12), p. 1127 (2018)
Journal Article
Wagner, T.; Huang, G.; Ermler, U.; Shima, S.: How [Fe]-Hydrogenase from Methanothermobacter is Protected Against Light and Oxidative Stress. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 57 (46), pp. 15056 - 15059 (2018)
Journal Article
Vögeli, B.; Rosenthal, R.; Stoffel, G.; Wagner, T.; Kiefer, P.; Cortina, N. S.; Shima, S.; Erb, T. J.: InhA, the enoyl-thioester reductase from Mycobacterium tuberculosis forms a covalent adduct during catalysis. JOURNAL OF BIOLOGICAL CHEMISTRY 293 (44), pp. 17200 - 17207 (2018)
Journal Article
Engilberge, S.; Riobe, F.; Wagner, T.; Di Pietro, S.; Breyton, C.; Franzetti, B.; Shima, S.; Girard, E.; Dumont, E.; Maury, O.: Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography. CHEMISTRY-A EUROPEAN JOURNAL 24 (39), pp. 9739 - 9746 (2018)
Journal Article
Huang, G.; Wagner, T.; Ermler, U.; Bill, E.; Ataka, K.; Shima, S.: Dioxygen Sensitivity of [Fe]-Hydrogenase in the Presence of Reducing Substrates. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 57 (18), pp. 4917 - 4920 (2018)
Journal Article
Vögeli, B.; Engilberge, S.; Girard, E.; Riobe, F.; Maury, O.; Erb, T. J.; Shima, S.; Wagner, T.: Archaeal acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115 (13), pp. 3380 - 3385 (2018)
2017
Journal Article
Bai, L.; Wagner, T.; Xu, T.; Hu, X.; Ermler, U.; Shima, S.: A Water-Bridged H-Bonding Network Contributes to the Catalysis of the SAM-Dependent C-Methyltransferase HcgC. Angewandte Chemie International Edition 56 (36), pp. 10806 - 10809 (2017)
Journal Article
Wagner, T.; Koch, J.; Ermler, U.; Shima, S.: Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction. Science 357 (6352), pp. 699 - 702 (2017)
Journal Article
Wagner, T.; Wegner, C.; Kahnt, J.; Ermler, U.; Shima, S.: Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales. Journal of Bacteriology 199 (16), UNSP e00197-17 (2017)
Journal Article
Rosenthal, R.; Vogeli, B.; Wagner, T.; Shima, S.; Erb, T.: A conserved threonine prevents self-intoxication of enoyl-thioester reductases. Nature Chemical Biology 13 (7), pp. 745 - 749 (2017)
Journal Article
Bai, L.; Fujishiro, T.; Huang, G.; Koch, J.; Takabayashi, A.; Yokono, M.; Tanaka, A.; Xu, T.; Hu, X.; Ermler, U. et al.; Shima, S.: Towards artificial methanogenesis: biosynthesis of the [Fe]-hydrogenase cofactor and characterization of the semisynthetic hydrogenase. Faraday Discussions 198, pp. 37 - 58 (2017)
Journal Article
Wang, M.; Artero, V.; Hammarstrom, L.; Martinez, J.; Karlsson, J.; Gust, D.; Summers, P.; Machan, C.; Brueggeller, P.; Windle, C. et al.; Kageshima, Y.; Cogdell, R.; Tolod, K.; Kibler, A.; Apaydin, D.; Fujita, E.; Ehrmaier, J.; Shima, S.; Gibson, E.; Karadas, F.; Harriman, A.; Inoue, H.; Kudo, A.; Takayama, T.; Wasielewski, M.; Cassiola, F.; Yagi, M.; Ishida, H.; Franco, F.; Kang, S.; Nocera, D.; Li, C.; Di Fonzo, F.; Park, H.; Sun, L.; Setoyama, T.; Kang, Y.; Ishitani, O.; Shen, J.; Son, H.; Masaoka, S.: Molecular catalysts for artificial photosynthesis: general discussion. Faraday Discussions 198, pp. 353 - 395 (2017)
2016
Journal Article
Wagner, T.; Ermler, U.; Shima, S.: The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters. Science 354 (6308 Sp. Iss. SI), pp. 114 - 117 (2016)
Journal Article
Shima, S.: The Biological Methane-Forming Reaction: Mechanism Confirmed Through Spectroscopic Characterization of a Key Intermediate. Angewandte Chemie, International Edition in English 55 (44), pp. 13648 - 13649 (2016)
Journal Article
Upadhyay, V.; Ceh, K.; Tumulka, F.; Abele, R.; Hoffmann, J.; Langer, J.; Shima, S.; Ermler, U.: Molecular characterization of methanogenic N-5-methyl-tetrahydromethanopterin: Coenzyme M methyltransferase. Biochimica et Biophysica Acta-Biomembranes 1858 (9), pp. 2140 - 2144 (2016)
Journal Article
Wagner, T.; Kahnt, J.; Ermler, U.; Shima, S.: Didehydroaspartate Modification in Methyl-CoenzymeM Reductase Catalyzing Methane Formation. Angewandte Chemie-International Edition 55 (36), pp. 10630 - 10633 (2016)
Journal Article
Fujishiro, T.; Bai, L.; Xu, T.; Xie, X.; Schick, M.; Kahnt, J.; Rother, M.; Hu, X.; Ermler, U.; Shima, S.: Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis. Angewandte Chemie International Edition 55 (33), pp. 9648 - 9651 (2016)
Journal Article
Wagner, T.; Ermler, U.; Shima, S.: MtrA of the sodium ion pumping methyltransferase binds cobalamin in a unique mode. Scientific Reports 6, 28226 (2016)
Journal Article
Duin, E.C.; Wagner, T.; Shima, S.; Prakash, D.; Cronin, B.; Yanez-Ruiz, D.R.; Duval, S.; Rümbeli, R.; Stemmler, R.T.; Thauer, R.K. et al.; Kindermann, M.: Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol. Proceedings of the National Academy of Sciences of the United States of America 113 (22), pp. 6172 - 6177 (2016)
Journal Article
Shima, S.; Fujishiro, T.: Identification of the biosynthetic enzymes of the [Fe]-hydrogenase cofactor based on the crystal structure of the proteins. Kouso-Kogaku News 76, pp. 26 - 30 (2016)
2015
Journal Article
Shima, S.; Chen, D.; Xu, T.; Wodrich, M. D.; Fujishiro, T.; Schultz, K. M.; Kahnt, J.; Ataka, K.; Hu, X.: Reconstitution of [Fe]-hydrogenase using model complexes. Nature Chemistry 7 (12), pp. 995 - 1002 (2015)
Journal Article
Hidese, R.; Ataka, K.; Bill, E.; Shima, S.: CuI and H2O2 inactivate and FeII inhibits [Fe]-hydrogenase at very low concentrations. ChemBioChem: A European Journal of Chemical Biology 16 (13), pp. 1861 - 1865 (2015)
Journal Article
Fujishiro, T.; Ataka, K.; Ermler, U.; Shima, S.: Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs. The FEBS Journal 282 (17), pp. 3412 - 3423 (2015)
Journal Article
Fujishiro, T.; Kahnt, J.; Ermler, U.; Shima, S.: Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor. Nature Communications 6, 6895 (2015)
Journal Article
Shima, S.: An energy metabolism under anoxic conditions: Enzyme chemistry of methanogenesis. Kagakutokogyo (68), pp. 706 - 708 (2015)
2014
Journal Article
Kojima, H.; Moll, J.; Kahnt, J.; Fukui, M.; Shima, S.: A reversed genetic approach reveals the coenzyme specificity and other catalytic properties of three enzymes putatively involved in anaerobic oxidation of methane with sulfate. Environmental Microbiology 16 (11 Sp. Iss. SI), pp. 3431 - 3442 (2014)
Journal Article
Fujishiro, T.; Ermler, U.; Shima, S.: A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis. FEBS Letters 588 (17), pp. 2789 - 2793 (2014)
Journal Article
Fujishiro, T.; Tamura, H.; Schick, M.; Kahnt, J.; Xie, X.; Ermler, U.; Shima, S.: Identification of the Hcg enzymes in biosynthesis of [Fe]-hydrogenase cofactor by a structural genomics-based approach. Journal of Biological Inorganic Chemistry 19 (Suppl. 2), p. S767 - S767 (2014)
Journal Article
Vitt, S.; Ma, K.; Warkentin, E.; Moll, J.; Pierik, A. J.; Shima, S.; Ermler, U.: The F420-Reducing [NiFe]-Hydrogenase Complex from Methanothermobacter marburgensis, the First X-ray Structure of a Group 3 Family Member. Journal of Molecular Biology (London) 426 (15), pp. 2813 - 2826 (2014)
Journal Article
Kaneko, M.; Takano, Y.; Chikaraishi, Y.; Ogawa, N.; Asakawa, S.; Watanabe, T.; Shima, S.; Kruger, M.; Matsushita, M.; Kimura, H. et al.; Ohkouchi, N.: Quantitative Analysis of Coenzyme F430 in Environmental Samples: A New Diagnostic Tool for Methanogenesis and Anaerobic Methane Oxidation. Analytical Chemistry 86 (7), pp. 3633 - 3638 (2014)
Journal Article
Fujishiro, T.; Tamura, H.; Schick, M.; Kahnt, J.; Shima, S.; Xie, X.; Ermler, U.; Shima, S.: Biochemical and X-ray crystal structure analyses of Hcg proteins involved in biosynthesis of the FeGP cofactor of [Fe]-hydrogenase. Journal of Biological Inorganic Chemistry 19 (Suppl. 1), p. S223 - S223 (2014)
Journal Article
Fujishiro, T.; Shima, S.: Functional analysis based on tertiary structure of proteins. Seibutsukougakukaishi (92), 676 (2014)
Journal Article
Shima, S.: Enzyme chemistry of methanogenesis and anaerobic oxidation of methane. Kagakutoseibutsu 52, pp. 307 - 312 (2014)
2013
Journal Article
Fujishiro, T.; Tamura, H.; Schick, M.; Kahnt, J.; Xie, X. L.; Ermler, U.; Shima, S.: Identification of the HcgB Enzyme in [Fe]-Hydrogenase-Cofactor Biosynthesis. Angewandte Chemie, International Edition in English 52 (48), pp. 12555 - 12558 (2013)
Journal Article
Tamura, H.; Salomone-Stagni, M.; Fujishiro, T.; Warkentin, E.; Meyer-Klaucke, W.; Ermler, U.; Shima, S.: Crystal Structures of [Fe]-Hydrogenase in Complex with Inhibitory Isocyanides: Implications for the H-2-Activation Site. Angewandte Chemie-International Edition 52 (37), pp. 9656 - 9659 (2013)
Journal Article
Takano, Y.; Kaneko, M.; Kahnt, J.; Imachi, H.; Shima, S.; Ohkouchi, N.: Detection of coenzyme F430 in deep sea sediments: A key molecule for biological methanogenesis. Organic Geochemistry 58, pp. 137 - 140 (2013)
Journal Article
Mills, D. J.; Vitt, S.; Strauss, M.; Shima, S.; Vonck, J.: De novo modeling of the F420-reducing [NiFe]-hydrogenase from a methanogenic archaeon by cryo-electron microscopy. eLife 2, e00218 (2013)
Journal Article
Milucka, J.; Widdel, F.; Shima, S.: Immunological detection of enzymes for sulfate reduction in anaerobic methane-oxidizing consortia. Environmental Microbiology (15), pp. 1561 - 1571 (2013)
2012
Journal Article
Upadhyay, V.; Demmer, U.; Warkentin, E.; Moll, J.; Shima, S.; Ermler, U.: Structure and Catalytic Mechanism of N-5,N-10-Methenyltetrahydromethanopterin Cyclohydrolase. Biochemistry 51 (42), pp. 8435 - 8443 (2012)
Journal Article
Shima, S.; Ermler, U.: Crystal structure and biochemistry of methyl-coenzyme M reductase from Black Sea mats mediating anaerobic oxidation of methane. Biseibutsu Seitai 27, pp. 55 - 62 (2012)
Journal Article
Schick, M.; Xie, X. L.; Ataka, K.; Kahnt, J.; Linne, U.; Shima, S.: Biosynthesis of the Iron-Guanylylpyridinol Cofactor of [Fe]-Hydrogenase in Methanogenic Archaea as Elucidated by Stable-Isotope Labeling. Journal of the American Chemical Society 134 (6), pp. 3271 - 3280 (2012)
Journal Article
Shima, S.; Krueger, M.; Weinert, T.; Demmer, U.; Kahnt, J.; Thauer, R. K.; Ermler, U.: Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically. Nature 481 (7379), pp. 98 - 101 (2012)
Journal Article
Shima, S.; Schick, M.; Kahnt, J.; Ataka, K.; Steinbach, K.; Linne, U.: Evidence for acyl-iron ligation in the active site of [Fe]-hydrogenase provided by mass spectrometry and infrared spectroscopy. Dalton Transactions 41 (3), pp. 767 - 771 (2012)
2011
Journal Article
Basen, M.; Kruger, M.; Milucka, J.; Kuever, J.; Kahnt, J.; Grundmann, O.; Meyerdierks, A.; Widdel, F.; Shima, S.: Bacterial enzymes for dissimilatory sulfate reduction in a marine microbial mat (Black Sea) mediating anaerobic oxidation of methane. Environmental Microbiology 13 (5), pp. 1370 - 1379 (2011)
Journal Article
Shima, S.; Ermler, U.: Structure and Function of [Fe]-Hydrogenase and its Iron-Guanylylpyridinol (FeGP) Cofactor. European Journal of Inorganic Chemistry (7 Sp. Iss. SI), pp. 963 - 972 (2011)
Journal Article
Shima, S.; Ataka, K.: Isocyanides inhibit [Fe]-hydrogenase with very high affinity. FEBS Letters 585 (2), pp. 353 - 356 (2011)
Journal Article
Shima, S.; Schick, M.; Tamura, H.: PREPARATION OF [FE]-HYDROGENASE FROM METHANOGENIC ARCHAEA. Methods in Enzymology (494), pp. 119 - 137 (2011)
2010
Journal Article
Salomone-Stagni, M.; Stellato, F.; Whaley, C. M.; Vogt, S.; Morante, S.; Shima, S.; Rauchfuss, T. B.; Meyer-Klaucke, W.: The iron-site structure of [Fe]-hydrogenase and model systems: an X-ray absorption near edge spectroscopy study. Dalton Transactions 39 (12), pp. 3057 - 3064 (2010)
Journal Article
Shima, S.; Vogt, S.; Gobels, A.; Bill, E.: Iron-chromophore circular dichroism of [Fe]-hydrogenase: the conformational change required for H2 activation. Angewandte Chemie, International Edition in English 49 (51), pp. 9917 - 9921 (2010)
Journal Article
Thauer, R. K.; Kaster, A. K.; Goenrich, M.; Schick, M.; Hiromoto, T.; Shima, S.: Hydrogenases from methanogenic archaea, nickel, a novel cofactor, and H2 storage. Annual Review of Biochemistry 79, 79, pp. 507 - 536 (2010)
2009
Journal Article
Ceh, K.; Demmer, U.; Warkentin, E.; Moll, J.; Thauer, R. K.; Shima, S.; Ermler, U.: Structural Basis of the Hydride Transfer Mechanism in F420-Dependent Methylenetetrahydromethanopterin Dehydrogenase. Biochemistry 48, pp. 10098 - 10105 (2009)
Journal Article
Hiromoto, T.; Ataka, K.; Pilak, O.; Vogt, S.; Stagni, M. S.; Meyer-Klaucke, W.; Warkentin, E.; Thauer, R. K.; Shima, S.; Ermler, U.: The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex. FEBS Letters 583 (3), pp. 585 - 590 (2009)
Journal Article
Hiromoto, T.; Warkentin, E.; Moll, J.; Ermler, U.; Shima, S.: The Crystal Structure of an [Fe]-Hydrogenase-Substrate Complex Reveals the Framework for H2 Activation. Angewandte Chemie Int. ed. 48, pp. 6457 - 6460 (2009)
2008
Journal Article
Ettwig, K. F.; Shima, S.; van de Pas-Schoonen, K. T.; Kahnt, J.; Medema, M. H.; op den Camp, H. J. M.; Jetten, M. S. M.; Strous, M.: Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea. Environmental Microbiology 10 (11), pp. 3164 - 3173 (2008)
Journal Article
Guo, Y.; Wang, H.; Xiao, Y.; Vogt, S.; Thauer, R. K.; Shima, S.; Volkers, P. I.; Rauchfuss, T. B.; Pelmenschikov, V.; Case, D. A. et al.; Alp, E. E.; Sturhahn, W.; Yoda, Y.; Cramer, S. P.: Characterization of the Fe Site in Iron−Sulfur Cluster-Free Hydrogenase (Hmd) and of a Model Compound via Nuclear Resonance Vibrational Spectroscopy (NRVS). Inorg. Chem. 47 (10), pp. 3969 - 3977 (2008)
Journal Article
Mayr, S.; Latkoczy, C.; Krüger, M.; Günther, D.; Shima, S.; Thauer, R. K.; Widdel, F.; Jaun, B.: Structure of an F430 variant from archaea associated with anaerobic oxidation of methane. J. Am. Chem. Soc. 130 (32), pp. 10758 - 10767 (2008)
Journal Article
Shima, S.: [Structure of [Fe]-hydrogenase and the convergent evolution of the active site of hydrogenases]. Seikagaku 80 (9), pp. 846 - 849 (2008)
Journal Article
Shima, S.; Pilak, O.; Vogt, S.; Schick, M.; Stagni, M. S.; Meyer-Klaucke, W.; Warkentin, E.; Thauer, R. K.; Ermler, U.: The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site. Science 321 (5888), pp. 572 - 575 (2008)
Journal Article
Thauer, R. K.; Shima, S.: Methane as Fuel for Anaerobic Microorganisms. Annals of the New York Academy of Sciences 1125, pp. 158 - 170 (2008)
Journal Article
Vogt, S.; Lyon, E.; Shima, S.; Thauer, R.: The exchange activities of [Fe] hydrogenase (iron-sulfur-cluster-free hydrogenase) from methanogenic archaea in comparison with the exchange activities of [FeFe] and [NiFe] hydrogenases. J Biol Inorg Chem. 13 (1), pp. 97 - 106 (2008)
2007
Journal Article
Seedorf, H.; Hagemeier, C.; Shima, S.; Thauer, R.; Warkentin, E.; Ermler, U.: Structure of coenzyme F420H2 oxidase (FprA), a di-iron flavoprotein from methanogenic Archaea catalyzing the reduction of O2 to H2O. FEBS Journal 274, pp. 1588 - 99 (2007)
Journal Article
Kahnt, J.; Buchenau, B.; Mahlert, F.; Krueger, M.; Shima, S.; Thauer, R.: Post-translational modifications in the active site region of methyl-coenzyme M reductase from methanogenic and methanotrophic archaea. The FEBS Journal 274, pp. 4913 - 21 (2007)
Journal Article
Shima, S.; Thauer, R. K.: A third type of hydrogenase catalyzing H2 activation. The Chemical Record 7 (1), pp. 37 - 46 (2007)
2006
Journal Article
Korbas, M.; Vogt, S.; Meyer-Klaucke, W.; Bill, E.; Lyon, E.; Thauer, R.; Shima, S.: The Iron-Sulfur Cluster-free Hydrogenase (Hmd) Is a Metalloenzyme with a Novel Iron Binding Motif. J. Biol. Chem. 281, pp. 30804 - 13 (2006)
Journal Article
Pilak, O.; Mamat, B.; Vogt, S.; Hagemeier, C.; Thauer, R.; Shima, S.; Vonrhein, C.; Warkentin, E.; Ermler, U.: The crystal structure of the apoenzyme of the iron-sulphur cluster-free hydrogenase. Journal of Molecular Biology 358 (3), pp. 798 - 09 (2006)
Journal Article
Thauer, R.; Shima, S.: Biogeochemistry: Methane and microbes. Nature (News and Views) 7086, pp. 878 - 79 (2006)
Journal Article
Acharya, P.; Eberhard, W.; Ulrich, E.; Rudolf, T.; Shima, S.: The Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with its Coenzymes. J. Mol. Biol 357, pp. 870 - 879 (2006)
Journal Article
Acharya, P.; Warkentin, E.; Ermler, U.; Thauer, R. K.; Shima, S.: The structure of a Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with its Coenzymes. Journal of Molecular Biology (London) 357 (3), pp. 870 - 879 (2006)
Journal Article
Shima, S.; Thauer, R.: Anaearobic methane oxidation by archaea: a biochemical approach. Bioscience & Industry 64, pp. 23 - 6 (2006)
2005
Journal Article
Shima, S.; Thauer, R. K.: Methyl-coenzyme M reductase and the anaerobic oxidation of methane in methanotrophic Archaea. Current Opinion in Microbiology 8 (6), pp. 643 - 648 (2005)
Journal Article
Shima, S.; Lyon, E. J.; Thauer, R. K.; Mienert, B.; Bill, E.: Mössbauer studies of the iron-sulfur cluster-free hydrogenase: The electronic state of the mononuclear Fe active site. Journal of the American Chemical Society 127 (29), pp. 10430 - 10435 (2005)
Journal Article
Aufhammer, S. W.; Warkentin, E.; Ermler, U.; Hagemeier, C. H.; Thauer, R. K.; Shima, S.: Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F420: Architecture of the F-420/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family. Protein Science 14 (7), pp. 1840 - 1849 (2005)
Journal Article
Warkentin, E.; Hagemeier, C. H.; Shima, S.; Thauer, R. K.; Ermler, U.: The structure of F420-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure. Acta Crystallographica Section D-Biological Crystallography 61, pp. 198 - 202 (2005)
2004
Journal Article
Sakasegawa, S. I.; Hagemeier, C. H.; Thauer, R. K.; Essen, L. O.; Shima, S.: Structural and functional analysis of the gpsA gene product of Archaeoglobus fulgidus: A glycerol-3-phosphate dehydrogenase with an unusual NADP(+) preference. Protein Science 13 (12), pp. 3161 - 3171 (2004)
Journal Article
Lyon, E. J.; Shima, S.; Boecher, R.; Thauer, R. K.; Grevels, F. W.; Bill, E.; Roseboom, W.; Albracht, S. P. J.: Carbon monoxide as an intrinsic ligand to iron in the active site of the iron-sulfur-cluster-free hydrogenase H-2-Forming methylenetetrahydromethanopterin dehydrogenase as revealed by infrared spectroscopy. Journal of the American Chemical Society 126 (43), pp. 14239 - 14248 (2004)
Journal Article
Seedorf, H.; Dreisbach, A.; Hedderich, R.; Shima, S.; Thauer, R. K.: F420H2 oxidase (FprA) from Methanobrevibacter arboriphilus, a coenzyme F-420-dependent enzyme involved in O-2 detoxification. Archives of Microbiology 182 (2-3), pp. 126 - 137 (2004)
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Shima, S.; Thauer, R. K.; Ermler, U.: Hyperthermophilic and salt-dependent formyltransferase from Methanopyrus kandleri. Biochemical Society Transactions 32, pp. 269 - 272 (2004)
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Aufhammer, S. W.; Warkentin, E.; Berk, H.; Shima, S.; Thauer, R. K.; Ermler, U.: Coenzyme binding in F420-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family. Structure 12 (3), pp. 361 - 370 (2004)
Journal Article
Lyon, E. J.; Shima, S.; Buurman, G.; Chowdhuri, S.; Batschauer, A.; Steinbach, K.; Thauer, R. K.: UV-A/blue-light inactivation of the 'metal-free' hydrogenase (Hmd) from methanogenic archaea - The enzyme contains functional iron after all. European Journal of Biochemistry 271 (1), pp. 195 - 204 (2004)
Journal Article
Shima, S.; Lyon, E. J.; Sordel-Klippert, M. S.; Kauss, M.; Kahnt, J.; Thauer, R. K.; Steinbach, K.; Xie, X. L.; Verdier, L.; Griesinger, C.: The cofactor of the iron-sulfur cluster free hydrogenase Hmd: Structure of the light-inactivation product. Angewandte Chemie-International Edition 43 (19), pp. 2547 - 2551 (2004)
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