Publications

2020 2019 | 2018 | 2017 | 2016 | 2015| 2014 | 2013 and earlier


2020

Dell'Aquila G, Zauner S, Heimerl T, Kahnt J, Samel-Gondesen V, Runge S, Hempel F, Maier UG. (2020)
Mobilization and Cellular Distribution of Phosphate in the Diatom Phaeodactylum tricornutum. Front Plant Sci. 2020 Jun 3;11:579. doi: 10.3389/fpls.2020.00579. 

Hakobyan A, Zhu J, Glatter T, Paczia N, Liesack W. (2020)
Hydrogen utilization by Methylocystis sp. strain SC2 expands the known metabolic versatility of type IIa methanotrophs. Metab Eng. 2020 May 30;61:181-196. doi: 10.1016/j.ymben.2020.05.003. 

Stehlik T, Kremp M, Kahnt J, Bölker M, Freitag J. (2020) 
Peroxisomal targeting of a protein phosphatase type 2C via mitochondrial transit. Nat Commun. 2020 May 12;11(1):2355. doi: 10.1038/s41467-020-16146-3.

Freitas C, Glatter T, Ringgaard S. (2020)
Specific proteomic adaptation to distinct environments in Vibrio parahaemolyticus includes significant fluctuations in expression of essential proteins. Environ Microbiol. 2020 Mar 26. doi: 10.1111/1462-2920.14997. 

Schramm T, Lempp M, Beuter D, Sierra SG, Glatter T, Link H. (2020)
High-throughput enrichment of temperature-sensitive argininosuccinate synthetase for two-stage citrulline production in E. coli. Metab Eng. 2020 Jul.;60:14-24. doi: 10.1016/j.ymben.2020.03.004.

Iyer SC, Casas-Pastor D, Kraus D, Mann P, Schirner K, Glatter T, Fritz G, Ringgaard S. (2020)
Transcriptional regulation by σ factor phosphorylation in bacteria. Nat Microbiol. 2020 Jan 27. doi: 10.1038/s41564-019-0648-6.

Lampaki D, Diepold A, Glatter T. (2020) 
A Serial Sample Processing Strategy with Improved Performance for in-Depth Quantitative Analysis of Type III Secretion Events in Pseudomonas aeruginosa. J Proteome Res. 2020 Jan 3. doi: 10.1021/acs.jproteome.9b00628.

2019

Schada von Borzyskowski L, Severi F, Krüger K, Hermann L, Gilardet A, Sippel F, Pommerenke B, Claus P, Cortina NS, Glatter T, Zauner S. Zarzycki J, Fuchs BM, Bremer E, Maier UG, Amann RI, Erb TJ. (2019)
Marine Proteobacteria metabolize glycolate via the β-hydroxyaspartate cycle. Nature. 2019 Nov 13. doi: 10.1038/s41586-019-1748-4. [Epub ahead of print]

Freitas, C., Glatter, T., Ringaard, S. (2019)
The release of a distinct cell type from swarm colonies facilitates dissemination of Vibrio parahaemolyticus in the environment, The ISME Journal October 17, 2019 doi: 10.1038/s41396-019-0521-x

Hakobyan A, Schneider MB, Liesack W, Glatter T. (2019)
Efficient Tandem LysC/Trypsin Digestion in Detergent Conditions. Proteomics. 2019 Sep 19:e1900136. doi: 10.1002/pmic.201900136

Sander T, Wang CY, Glatter T, Link H. (2019)
CRISPRi-Based Downregulation of Transcriptional Feedback Improves Growth and Metabolism of Arginine Overproducing E. coli. ACS Synth Biol. 2019 Sep 20;8(9):1983-1990. doi: 10.1021/acssynbio.9b00183

Zingler P, Särchen V, Glatter T, Caning L, Saggau C, Kathayat RS, Dickinson BC, Adam D, Schneider-Brachert W, Schütze S, Fritsch J. (2019)
Palmitoylation is required for TNF-R1 signaling. Cell Commun Signal. 2019 Aug 5;17(1):90. doi: 10.1186/s12964-019-0405-8

Pauls D, Hamarat Y, Trufasu L, Schendzielorz TM, Gramlich G, Kahnt J, Vanselow JT, Schlosser A, Wegener C. (2019)
Drosophila carboxypeptidase D (SILVER) is a key enzyme in neuropeptide processing required to maintain locomotor activity levels and survival rate. Eur J Neurosci. 2019 Jul 16. doi: 10.1111/ejn.14516

Rudenko I, Ni B, Glatter T, Sourjik V. (2019)
Inefficient Secretion of Anti-sigma Factor FlgM Inhibits Bacterial Motility at High Temperature. iScience. 2019 Jun 28;16:145-154. doi: 10.1016/j.isci.2019.05.022

Schmitt G, Saft M, Arndt F, Kahnt J, Heider J. (2019)
Two Different Quinohemoprotein Amine Dehydrogenases Initiate Anaerobic Degradation of Aromatic Amines in Aromatoleum aromaticum EbN1. J Bacteriol. 2019 Jul 24;201(16). pii: e00281-19.  doi: 10.1128/JB.00281-19

Brenzinger S, van der Aart LT, van Wezel GP, Lacroix JM, Glatter T, Briegel A. (2019)
Structural and Proteomic Changes in Viable but Non-culturable Vibrio cholerae. Front Microbiol. 2019 Apr 17;10:793. doi: 10.3389/fmicb.2019.00793

Gómez-Santos N, Glatter T, Koebnik R, Świątek-Połatyńska MA, Søgaard-Andersen L (2019)
A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane. Nat Commun. 2019 Mar 25;10(1):1360.  doi: 10.1038/s41467-019-09366-9

Watanabe T, Wagner T, Huang G, Kahnt J, Ataka K, Ermler U, Shima S. (2019)
The Bacterial [Fe]-Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives asSubstrates. Angew Chem Int Ed Engl. 2019 Mar 11;58(11):3506-3510. doi:10.1002/anie.201813465

Arndt F, Schmitt G, Winiarska A, Saft M, Seubert A, Kahnt J, Heider J. (2019)
Characterization of an Aldehyde Oxidoreductase From the Mesophilic Bacterium Aromatoleum aromaticum EbN1, a Member of a New Subfamily of Tungsten-Containing Enzymes. Front Microbiol. 2019 Jan 31;10:71. doi: 10.3389/fmicb.2019.00071

Han X, Altegoer F, Steinchen W, Binnebesel L, Schuhmacher J, Glatter T, Giammarinaro PI, Djamei A, Rensing SA, Reissmann S, Kahmann R, Bange G. (2019)
A kiwellin disarms the metabolic activity of a secreted fungal virulence factor. Nature. 2019 Jan;565(7741):650-653. doi: 10.1038/s41586-018-0857-9.

Sander T, Farke N, Diehl C, Kuntz M, Glatter T, Link H. (2019)
Allosteric Feedback Inhibition Enables Robust Amino Acid Biosynthesis in E. coli by Enforcing Enzyme Overabundance. Cell Syst. 2019 Jan 23;8(1):66-75.e8. doi: 10.1016/j.cels.2018.12.005

Liccardi G, Ramos Garcia L, Tenev T, Annibaldi A, Legrand AJ, Robertson D, Feltham R, Anderton H, Darding M, Peltzer N, Dannappel M, Schünke H, Fava LL, Haschka MD, Glatter T, Nesvizhskii A, Schmidt A, Harris PA, Bertin J, Gough PJ, Villunger A, Silke J, Pasparakis M, Bianchi K, Meier P. (2019)
RIPK1 and Caspase-8 Ensure Chromosome Stability Independently of Their Role in Cell Death and Inflammation. Mol Cell. 2019 Feb 7;73(3):413-428.e7. doi: 10.1016/j.molcel.2018.11.010

2018

Yang W, Alvarado A, Glatter T, Ringgaard S, Briegel A. (2018)
Baseplate variability of Vibrio cholerae chemoreceptor arrays. Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):13365-13370. doi: 10.1073/pnas.1811931115

Bernhardsgrütter I, Vögeli B, Wagner T, Peter DM, Cortina NS, Kahnt J, Bange G, Engilberge S, Girard E, Riobé F, Maury O, Shima S, Zarzycki J, Erb TJ. (2018)
The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite. Nat Chem Biol. 2018 Dec;14(12):1127-1132. doi:10.1038/s41589-018-0153-x 

Hakobyan A, Liesack W, Glatter T. (2018)
Crude-MS Strategy for in-Depth Proteome Analysis of the Methane-Oxidizing Methylocystis sp. strain SC2. J Proteome Res. 2018 Sep 7;17(9):3086-3103. doi:10.1021/acs.jproteome.8b00216

Muraleedharan S, Freitas C, Mann P, Glatter T, Ringgaard S. (2018)
A cell length-dependent transition in MinD-dynamics promotes a switch in division-site placement and preservation of proliferating elongated Vibrio parahaemolyticus swarmer cells. Mol Microbiol. 2018 Aug;109(3):365-384. doi: 10.1111/mmi.13996.

Ma LS, Wang L, Trippel C, Mendoza-Mendoza A, Ullmann S, Moretti M, Carsten A, Kahnt J, Reissmann S, Zechmann B, Bange G, Kahmann R. (2018)
The Ustilago maydis repetitive effector Rsp3 blocks the antifungal activity of mannose-binding maize proteins. Nat Commun. 2018 Apr 27;9(1):1711. doi: 10.1038/s41467-018-04149-0

Feltham R, Jamal K, Tenev T, Liccardi G, Jaco I, Domingues CM, Morris O, John SW, Annibaldi A, Widya M, Kearney CJ, Clancy D, Elliott PR, Glatter T, Qiao Q, Thompson AJ, Nesvizhskii A, Schmidt A, Komander D, Wu H, Martin S, Meier P.  (2018)
Mind Bomb Regulates Cell Death during TNF Signaling by Suppressing RIPK1's Cytotoxic Potential. Cell Rep. 2018 Apr 10;23(2):470-484. doi:10.1016/j.celrep.2018.03.054

Diesner M, Gallot A, Binz H, Gaertner C, Vitecek S, Kahnt J, Schachtner J, Jacquin-Joly E, Gadenne C. (2018)
Mating-Induced Differential Peptidomics of Neuropeptides and Protein Hormones in Agrotis ipsilon Moths. J Proteome Res. 2018 Apr 6;17(4):1397-1414. doi: 10.1021/acs.jproteome.7b00779

Schada von Borzyskowski L, Carrillo M, Leupold S, Glatter T, Kiefer P, Weishaupt R, Heinemann M, Erb TJ. (2018)
An engineered Calvin-Benson-Bassham cycle for carbon dioxide fixation in Methylobacterium extorquens AM1. Metab Eng. 2018 May;47:423-433. doi: 10.1016/j.ymben.2018.04.003

2017

Yuan J, Jin F, Glatter T, Sourjik V. (2017)
Osmosensing by the bacterial PhoQ/PhoP two-component system. Proc Natl Acad Sci U S A. Dec 12,114(50):E10792-E10798. doi: 10.1073/pnas.1717272114

Christ P, Reifenrath A, Kahnt J, Hauser F, Hill SR, Schachtner J, Ignell R. (2017)
Feeding-induced changes in allatostatin-A and short neuropeptide F in the antennal lobes affect odor-mediated host seeking in the yellow fever mosquito, Aedes aegypti. PLoS One. 2017 Nov 22;12(11):e0188243. doi:10.1371/journal.pone.0188243

Laventie BJ, Glatter T, Jenal U. (2017)
Pull-Down with a c-di-GMP-Specific Capture Compound Coupled to Mass Spectrometry as a Powerful Tool to Identify Novel Effector Proteins, Methods Mol Biol.,1657:361-376. doi:10.1007/978-1-4939-7240-1_28

Schmitt G, Arndt F, Kahnt J, Heider J. (2017)
Adaptations to a loss-of-function mutation in the betaproteobacterium Aromatoleum aromaticum: recruitment of alternative enzymes for anaerobic phenylalanine degradation. J Bacteriol. 2017 Aug 7. pii: JB.00383-17. doi: 10.1128/JB.00383-17

Wagner T, Wegner CE, Kahnt J, Ermler U, Shima S. (2017)
Phylogenetic and structural comparisons of the three types of methyl-coenzyme M reductase from Methanococcales and Methanobacteriales. J Bacteriol. 2017 May 30. pii: JB.00197-17. doi: 10.1128/JB.00197-17

2016

Hauri S, Comoglio F, Seimiya M, Gerstung M, Glatter T, Hansen K, Aebersold R, Paro R, Gstaiger M, Beisel C. (2016)
A High-Density Map for Navigating the Human Polycomb Complexome. Map for Navigating the Human Polycomb Complexome, Cell Rep. Oct 4, 17(2):583-595 doi:10.1016/j.celrep.2016.08.096

Wagner T, Kahnt J, Ermler U, Shima S. (2016)
Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation. Angew Chem Int Ed Engl. 2016 Aug 26;55(36):10630-3. doi: 10.1002/anie.201603882

Fujishiro T, Bai L, Xu T, Xie X, Schick M, Kahnt J, Rother M, Hu X, Ermler U, Shima S. (2016)
Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis. Angew Chem Int Ed Engl. 2016 Aug 8;55(33):9648-51. doi: 10.1002/anie.201604352

Koerver, L., Melzer, J., Roca, E. A., Teichert, D., Glatter, T., Arama, E., and Broemer, M. (2016)
The de-ubiquitylating enzyme DUBA is essential for spermatogenesis in Drosophila. Cell Death Differ. 2016 Dec;23(12):2019-2030. doi: 10.1038/cdd.2016.79

Gliesche, D. G., Hussner, J., Witzigmann, D., Porta, F., Glatter, T., Schmidt, A., Huwyler, J., and Meyer Zu Schwabedissen, H. E. (2016)
Secreted Matrix Metalloproteinase-9 of Proliferating Smooth Muscle Cells as a Trigger for Drug Release from Stent Surface Polymers in Coronary Arteries, Mol Pharm. 2016 Jul 5;13(7):2290-300. doi:10.1021/acs.molpharmaceut.6b00033

Balmer, M. L., Ma, E. H., Bantug, G. R., Grahlert, J., Pfister, S., Glatter, T., Jauch, A., Dimeloe, S., Slack, E., Dehio, P., Krzyzaniak, M. A., King, C. G., Burgener, A. V., Fischer, M., Develioglu, L., Belle, R., Recher, M., Bonilla, W. V., Macpherson, A. J., Hapfelmeier, S., Jones, R. G., and Hess, C. (2016)
Memory CD8(+) T Cells Require Increased Concentrations of Acetate Induced by Stress for Optimal Function, Immunity. 2016 Jun 21;44(6):1312-24. doi:10.1016/j.immuni.2016.03.016

Ahrne, E., Glatter, T., Vigano, C., Schubert, C., Nigg, E. A., and Schmidt, A. (2016)
Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments, Journal of proteome research 15, 2537-2547. doi10.1021/acs.jproteome.6b00066

Glatter T, Ahrné E, Schmidt A. (2016)
Correction to "Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells". J Proteome Res. 2016 Feb 5;15(2):679. doi: 10.1021/acs.jproteome.6b00012 

2015

Shima S, Chen D, Xu T, Wodrich MD, Fujishiro T, Schultz KM, Kahnt J, Ataka K, Hu X. (2015)
Reconstitution of [Fe]-hydrogenase using model complexes. Nat Chem. 2015 Dec;7(12):995-1002. doi: 10.1038/nchem.2382

Muhr E, Schühle K, Clermont L, Sünwoldt K, Kleinsorge D, Seyhan D, Kahnt J, Schall I, Cordero PR, Schmitt G, Heider J. (2015)
Enzymes of anaerobic ethylbenzene and p-ethylphenol catabolism in 'Aromatoleum aromaticum': differentiation and differential induction. Arch Microbiol. 2015 Nov;197(9):1051-62. doi:10.1007/s00203-015-1142-z

Kahnt J, Schall I, Cordero PR, Schmitt G, Heider J. (2015)
Enzymes of anaerobic ethylbenzene and p-ethylphenol catabolism in 'Aromatoleum aromaticum': differentiation and differential induction. Arch Microbiol. 2015 Nov;197(9):1051-62. doi:10.1007/s00203-015-1142-z

Bauer M, Ahrné E, Baron AP, Glatter T, Fava LL, Santamaria A, Nigg EA, Schmidt A. (2015)
Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites. Data Brief. 2015 Sep 4;5:297-304. doi: 10.1016/j.dib.2015.08.015

Glatter T, Ahrné E, Schmidt A. (2015)
Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells. J Proteome Res. 2015 Nov 6;14(11):4472-85. doi:10.1021/acs.jproteome.5b00654

Rotem O, Nesper J, Borovok I, Gorovits R, Kolot M, Pasternak Z, Shin I, Glatter T, Pietrokovski S, Jenal U, Jurkevitch E. (2015)
An Extended Cyclic Di-GMP Network in the Predatory Bacterium Bdellovibrio bacteriovorus. J Bacteriol. 2015 Aug 31;198(1):127-37. doi: 10.1128/JB.00422-15

Harms A, Stanger FV, Scheu PD, de Jong IG, Goepfert A, Glatter T, Gerdes K, Schirmer T, Dehio C.
Adenylylation of Gyrase and Topo IV by FicT Toxins Disrupts Bacterial DNA Topology. Cell Rep. 2015 Sep 1;12(9):1497-507. doi:10.1016/j.celrep.2015.07.056

Laventie BJ, Nesper J, Ahrné E, Glatter T, Schmidt A, Jenal U. (2015)
Capture compound mass spectrometry--a powerful tool to identify novel c-di-GMP effector proteins. J Vis Exp. 2015 Mar 29;(97). doi: 10.3791/51404

Čajánek L, Glatter T, Nigg EA. (2015)
The E3 ubiquitin ligase Mib1 regulates Plk4 and centriole biogenesis. J Cell Sci. 2015 May 1;128(9):1674-82. doi:10.1242/jcs.166496

2014

Bauer M, Ahrné E, Baron AP, Glatter T, Fava LL, Santamaria A, Nigg EA, Schmidt A. (2014)
Evaluation of data-dependent and -independent mass spectrometric workflows for sensitive quantification of proteins and phosphorylation sites. J Proteome Res. 2014 Dec 5;13(12):5973-88. doi: 10.1021/pr500860c

Mazé A, Glatter T, Bumann D. (2014)
The central metabolism regulator EIIAGlc switches Salmonella from growth arrest to acute virulence through activation of virulence factor secretion. Cell Rep. 2014 Jun 12;7(5):1426-1433. doi:10.1016/j.celrep.2014.04.022

Pieles K, Glatter T, Harms A, Schmidt A, Dehio C. (2014)
An experimental strategy for the identification of AMPylation targets from complex protein samples. Proteomics. 2014 May;14(9):1048-52. doi: 10.1002/pmic.201300470

2013 AND EARLIER

Ahrné E, Molzahn L, Glatter T, Schmidt A. (2013)
Critical assessment of proteome-wide label-free absolute abundance estimation strategies. Proteomics. 2013 Sep;13(17):2567-78. doi:0.1002/pmic.201300135

Berti M, Ray Chaudhuri A, Thangavel S, Gomathinayagam S, Kenig S, Vujanovic M, Odreman F, Glatter T, Graziano S, Mendoza-Maldonado R, Marino F, Lucic B, Biasin V, Gstaiger M, Aebersold R, Sidorova JM, Monnat RJ Jr, Lopes M, Vindigni A. (2013)
Human RECQ1 promotes restart of replication forks reversed by DNA topoisomerase I inhibition. Nat Struct Mol Biol. 2013 Mar;20(3):347-54. doi:10.1038/nsmb.2501

Glatter T, Ludwig C, Ahrné E, Aebersold R, Heck AJ, Schmidt A. (2012)
Large-scale quantitative assessment of different in-solution protein digestion protocols reveals superior cleavage efficiency of tandem Lys-C/trypsin proteolysis over trypsin digestion. J Proteome Res. 2012 Nov 2;11(11):5145-56. doi:10.1021/pr300273g

Nesper J, Reinders A, Glatter T, Schmidt A, Jenal U. (2012)
A novel capture compound for the identification and analysis of cyclic di-GMP binding proteins. J Proteomics. 2012 Aug 3;75(15):4874-8. doi: 10.1016/j.jprot.2012.05.033

Choi H, Glatter T, Gstaiger M, Nesvizhskii AI. (2012)
SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments. J Proteome Res. 2012 Apr 6;11(4):2619-24. doi:10.1021/pr201185r

Iijima T, Wu K, Witte H, Hanno-Iijima Y, Glatter T, Richard S, Scheiffele P. (2011)
SAM68 regulates neuronal activity-dependent alternative splicing of neurexin-1. Cell. 2011 Dec 23;147(7):1601-14. doi: 10.1016/j.cell.2011.11.028

Glatter T, Schittenhelm RB, Rinner O, Roguska K, Wepf A, Jünger MA, Köhler K, Jevtov I, Choi H, Schmidt A, Nesvizhskii AI, Stocker H, Hafen E, Aebersold R, Gstaiger M. (2011)
Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome. Mol Syst Biol. 2011 Nov 8;7:547. doi: 10.1038/msb.2011.79

Ritz D, Vuk M, Kirchner P, Bug M, Schütz S, Hayer A, Bremer S, Lusk C, Baloh RH, Lee H, Glatter T, Gstaiger M, Aebersold R, Weihl CC, Meyer H. (2011)
Endolysosomal sorting of ubiquitylated caveolin-1 is regulated by VCP and UBXD1 and impaired by VCP disease mutations. Nat Cell Biol. 2011 Aug 7;13(9):1116-23. doi:10.1038/ncb2301

Theis M, Slabicki M, Junqueira M, Paszkowski-Rogacz M, Sontheimer J, Kittler R, Heninger AK, Glatter T, Kruusmaa K, Poser I, Hyman AA, Pisabarro MT, Gstaiger M, Aebersold R, Shevchenko A, Buchholz F. (2009)
Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division. EMBO J. 2009 May 20;28(10):1453-65. doi: 10.1038/emboj.2009.114

Habjan M, Pichlmair A, Elliott RM, Overby AK, Glatter T, Gstaiger M, Superti-Furga G, Unger H, Weber F. (2009)
NSs protein of rift valley fever virus induces the specific degradation of the double-stranded RNA-dependent protein kinase. J Virol. 2009 May;83(9):4365-75. doi: 10.1128/JVI.02148-08

Wepf A, Glatter T, Schmidt A, Aebersold R, Gstaiger M. (2009)
Quantitative interaction proteomics using mass spectrometry. Nat Methods. 2009 Mar;6(3):203-5. doi: 10.1038/nmeth.1302

Glatter T, Wepf A, Aebersold R, Gstaiger M. (2009)
An integrated workflow for charting the human interaction proteome: insights into the PP2A system. Mol Syst Biol. 2009;5:237. doi: 10.1038/msb.2008.75

 


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